Raphanus sativus (radish): 108816304
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Entry
108816304 CDS
T06014
Name
(RefSeq) probable CCR4-associated factor 1 homolog 11
KO
K12581
CCR4-NOT transcription complex subunit 7/8
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108816304
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108816304
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108816304
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108816304
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
CAF1
DEDDh_C
Motif
Other DBs
NCBI-GeneID:
108816304
NCBI-ProteinID:
XP_018444387
UniProt:
A0A6J0K8M3
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Position
2:complement(20178386..20179466)
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AA seq
278 aa
AA seq
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MINPDVGSVVVREVWAHNLESEFELISGIVEDFPFVSMDTEFPGVIYKADLRRRGNPGYL
YKLLKSNVDALSLVQVGLTLSDADGNLPDLGGLGGSRFIWEFNFRDFDVHRDPHAPDSIE
LLRRHGIDFERNRSEGVESERFAELMVSSGLICNCSASSVSVSWVTFHSAYDFGYLVKIL
TRRELPGSLGEFLRVLRAFFGERVYDVKHMMRFCERRLFGGLDRVARSLEVNREVGKCHQ
AGSDSLLTWQAFRRMRDLYFVEDGPEKHAGVLYGLEVF
NT seq
837 nt
NT seq
+upstream
nt +downstream
nt
atgatcaatccagatgttggttcagtggtggttcgtgaggtttgggctcacaatctggag
tctgagttcgagctgatcagcgggatcgtcgaagacttcccgttcgtctccatggacacg
gagttccccggcgtgatctacaaggcggatctccgccgccgtggaaaccctggctatctc
tacaagcttctcaaatccaacgtcgacgctctcagcctcgtccaggtcggtctcactctc
tccgacgccgacggaaacctccccgatctcggcggcctcggcgggagccggttcatctgg
gagttcaatttccgcgacttcgacgtccatcgcgacccccacgcgccggactcgatcgag
ctcctccgccgccacgggatcgatttcgagcgtaaccgcagcgaaggcgtcgagtcggag
aggttcgcggagctgatggtgtcgtcggggctgatctgcaactgcagcgcgtcgtcggtg
tcggtgagctgggtgacgtttcacagcgcgtacgatttcggttacctggtgaagatcctc
acgcgccgggagcttccggggtcgttgggagagtttctacgggtgctcagggcgtttttc
ggggagagagtgtatgatgtgaagcatatgatgaggttctgcgagcggaggttgtttggc
ggtttggaccgggtggctcggtcgcttgaggttaaccgggaggttgggaagtgtcatcag
gccggttcggatagtttgctgacgtggcaggcgtttcggaggatgagggatttgtatttt
gttgaggatgggccggagaagcatgccggagttttgtacggtttagaggttttttaa
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