Raphanus sativus (radish): 108816387
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Entry
108816387 CDS
T06014
Name
(RefSeq) general negative regulator of transcription subunit 3
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108816387
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108816387
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
108816387
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
108816387
BRITE hierarchy
SSDB
Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5965
Motif
Other DBs
NCBI-GeneID:
108816387
NCBI-ProteinID:
XP_018444465
UniProt:
A0A6J0K8U3
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Position
7:1786385..1791720
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AA seq
835 aa
AA seq
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MGASRKLQGEIDRVLKKVQEGVDVFDSIWNKVYDSDNVNQKEKFEADLKKEIKKLQRYRD
QIKTWIQSSEIKDKKVSASYEQSLVDARKLIEREMERFKICEKETKTKAFSKEGLGQQPK
TDPKEKAKSETRDWLNNVVSELESQIDSFEAELEGLSVKKGKTRPPRLTHLETSISRHKD
HIIKLELILRLLDNDELSPEQVNDVKDFLDDYVERNQDDFDDFNDVDDLYSTLPLDEVEG
LEDLVTAGPLVKGTPLSMKSSLAAPATQVRSISLPDDTTVPDSNSETLPKTPPAKNGGSL
LSAPSTPVGGRSSLNVPVSNVPNAPVAVSTSIPVQTSTESMGSLSPVASKEDDATTLSSR
KPPSSVADAPLRGIGRVSIPNQPQPSQPPSPSPANAARISATSAAEVAKRNIMGVESNVQ
PLTSPVSKMVLPPAAKGNDGTASDSNPGDVAASISRAYSPSIVSASQWRPGSPFQSQNET
VRGRTEIAPDQREKFLQRYQQVQQGHGNILGMPSLSGGNEKQFSSQQQNPLLQQSSAMSP
HGSMGIQAPGFSVMSSTSLQQPSNAMTQQLGQQPSAADVDHGRNDDQLQQNLPDDSTSIA
ASKTIPNEDDSKGLFDTPSGMPSYMLDPVQVTRDGPDFSPGQPIQPGQSSSSLGVIGRRS
NSELGAIGDPSALGAMHDQMHNLQMLEAAYYRLPQPKDSERPRPYTPRNPAITPQTFPQT
QAPIVNNPLFWERLGSDAYGTDTLFFAFYYQQNSYQQYLAAKELKKQSWRYHRKFNTWFQ
RHKEPKIATDEYEQGAYVYFDFQTPKDESQEGGWCQRIKNEFTFEYSYLEDELAV
NT seq
2508 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcgagccggaaattacaaggcgagatagatcgggtgctgaagaaggttcaggaa
ggcgttgatgttttcgacagcatctggaacaaggtatatgattcggataatgtaaaccaa
aaggagaagtttgaggcggacttgaagaaggagatcaagaagttgcagcggtacagggac
cagatcaagacttggattcagtctagtgagatcaaagataaaaaagtcagtgcatcatat
gagcaatccctggttgacgctcggaagctcattgagcgagaaatggagaggtttaagatc
tgtgagaaagaaaccaagacaaaggccttctctaaggaaggactgggtcagcaacctaaa
actgacccaaaagagaaagcaaagtcagagacaagagattggttgaacaatgtggtgagt
gaactcgagtcacagattgatagctttgaagctgagttggaaggactgtctgtcaaaaaa
ggaaagacaagaccgcccagattgacacatcttgaaacatctatttcaaggcacaaagat
catataataaagttggagttgatcttgaggcttctggacaatgatgaattaagtccagaa
caagtaaatgatgtcaaagattttctagatgattatgttgaacgaaatcaggatgatttt
gacgacttcaatgatgttgacgatctctatagcacgttgccgcttgatgaggtggagggt
cttgaagatctagttactgctggcccccttgtcaagggtactcctctgagcatgaagagt
tctttggcagcaccagcaactcaggttcggagcataagtttgccagatgatacaactgta
ccggacagcaactctgagacacttccaaaaacccctccagcgaaaaatggcggaagcctt
ctctcagcaccatcaacacccgttgggggacgttcaagtctgaatgttcccgtcagtaat
gttccaaatgcaccagttgccgtatcaacttctattcctgttcaaacttccacggaaagc
atgggaagtttgtctccagtggcttcaaaggaagacgacgcaacaaccttgtcttcccgt
aaaccaccctcgtctgttgctgatgctccattaaggggcattggtagggttagtatcccc
aaccagccccaaccaagtcagcctccgtctccaagtcctgctaatgcagctcgcattagt
gccacttcagcagctgaagttgcaaagaggaatataatgggagttgagagcaacgtccaa
cctctaacttctccggtgagcaaaatggtattgccaccagctgcgaagggtaatgatgga
actgcctctgatagcaaccctggtgatgttgcagcaagtattagtagagcttattcaccg
tctattgtatctgcttcgcagtggaggcctgggagtccctttcagagtcagaatgaaacg
gtccgtggaagaactgaaatagcaccagatcaaagagagaaattcttacagcggtatcag
caagtacaacaaggccatgggaacatcttaggcatgccttctctatctggaggaaacgag
aagcagttctcctcacaacagcaaaatcctcttttgcagcagagttctgccatgtctcct
catggtagcatgggaattcaggcaccaggttttagtgtcatgagttctacttccttacag
cagccatcaaatgccatgactcaacagctgggtcagcagccttctgctgcagatgtagat
catggcagaaatgatgatcagctgcaacaaaacttacctgatgattcaacttccatagca
gcttctaaaaccattccaaatgaggatgattctaaaggtctatttgatactccgtcggga
atgcccagctacatgttggatccagtacaggtaaccagggacggccctgatttctctcct
gggcaaccaatacaacccggtcaatcttcaagcagcctcggtgtcattggacgcagaagt
aactctgaattaggagccattggtgacccttcagctttaggggcaatgcatgatcagatg
cacaatctccagatgcttgaagcagcgtactatagacttcctcaacccaaagattcagaa
cgtcctagaccctatactccgaggaaccctgcaatcacacctcaaacatttccccaaaca
caagcgccaatcgtaaacaaccccttgttctgggaacgtttaggcagcgatgcttatgga
accgatactttgttctttgcattttattatcagcagaactcgtatcagcagtatctagcg
gcaaaagagctgaagaaacagtcatggagataccacagaaagttcaacacatggtttcag
agacacaaggagccaaagattgcaacggatgagtatgaacaaggagcctatgtttacttt
gatttccaaacccccaaagacgagagccaagaaggaggatggtgtcaaaggatcaaaaac
gagttcacgtttgaatacagttatcttgaagatgaactcgccgtgtag
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