Raphanus sativus (radish): 108816784
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Entry
108816784 CDS
T06014
Name
(RefSeq) probable pectate lyase 19
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108816784
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108816784
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GFIT
Motif
Pfam:
Pectate_lyase_4
Pec_lyase_N
Beta_helix
Mucin
Motif
Other DBs
NCBI-GeneID:
108816784
NCBI-ProteinID:
XP_018444852
UniProt:
A0A6J0KA51
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Position
7:complement(2862480..2864786)
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AA seq
525 aa
AA seq
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MEMARLLKLMLVFCIAGLIPTIRANISELDEYWSLRADKAREFTLQAYHSDPYEIVDHFH
ERHYDNSTDDTGTEEHSGNSTDDTGTEEHSSNSTDDTTTEEDSSNSTDDTATEEHSSNSA
DVTATEEDSGTKPEEAGTEVIEMVGNSTNSTRRSLKGKGKGKWSKLKGPCTASNPIDKCW
RCRTNWAKRRKKLAKCVRGFGHGTTGGKRGRIYVVTSNLDEDMVNPIPGTLRHAVIQKKP
LWIIFKNDMSIRLNQELLVNSHKTIDARGADVHIAHGAGITMQFVRNVIIHGLHIHHISE
SSGGMIRDSEDHFGMRTRADGDGLSIYGSSNIWIDHVSMSKCQDGLIDAIVGSTAITISN
SHFTHHNDVMLLGAQNNMNEADMKMQVTVAYNHFGKGLVQRMPRVRWGFVHVVNNDYTHW
ELYAIGGSQGPTILSHGNRFIAPPHLPYYKEVTKRDYASEDEWKHWTWRSEKDIFMNGAF
FRQSGDPHYKSAHTRKQMIKPKNGYAVSKLTKYAGALDCRVGRRC
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atggagatggctaggttattaaagttgatgcttgtgttctgtattgccggtctgattccg
accatacgagccaacatatcggagttggacgaatattggtcactgcgagccgacaaagct
cgagagttcactctccaagcttatcattctgatccttacgaaatcgtcgatcactttcat
gaacgtcactacgacaactctactgatgatactgggacagaggaacatagcggcaactct
actgatgataccgggacagaggaacatagcagcaactctactgatgataccactacagag
gaagatagcagcaactctactgatgataccgctacagaggaacatagcagcaactctgct
gatgttaccgctacagaggaagatagcggcacgaagcctgaagaggcgggaactgaggtc
attgaaatggtcgggaactcaacgaacagcactagacgaagcttaaaaggtaaaggcaaa
ggaaaatggagtaagctcaagggaccgtgtaccgcaagtaacccgatagataaatgctgg
cgttgccgtacgaactgggctaagcgtcgtaagaagcttgccaaatgtgtccgcgggttt
ggccacgggacgactggtgggaaacgtggacgtatctacgtggttacaagcaacctcgac
gaggacatggtgaaccctataccagggacattgcgtcacgccgtgattcaaaagaaacct
ctctggatcattttcaagaacgacatgagcattcgtttaaaccaagagcttttggttaat
agccacaagacgatcgatgcacgtggagctgatgtccatatcgcacatggcgcagggata
acaatgcagtttgttagaaatgttattatccatgggttgcatattcaccatatatctgag
agtagcggtggtatgattcgtgactcggaagaccatttcggaatgaggactagagccgat
ggtgacgggttatctatatacggttcgtctaacatatggattgaccatgtttcgatgtca
aaatgtcaagatggactaattgatgcaattgttggatccactgccattacaatctccaac
tctcacttcactcaccacaacgacgtgatgctgcttggtgcgcagaacaatatgaatgaa
gcggacatgaagatgcaagtcacagtggcttataaccattttggtaagggacttgtccag
aggatgccaagggttcgatggggatttgttcacgttgtgaacaatgattacactcattgg
gagctttacgctatcggaggtagtcaaggtccgactattctcagccatggaaaccgattc
atagctcctccacacttaccttattacaaagaggtgacaaagagagattatgcttctgag
gacgagtggaaacactggacatggagatctgagaaagatatattcatgaacggagctttt
ttcagacaatctggggatcctcattacaaaagtgctcacacgagaaaacaaatgattaaa
cctaaaaatggatacgctgtttctaagctgaccaaatacgcaggagcacttgattgcaga
gtcggtagacgctgttag
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