Raphanus sativus (radish): 108816931
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Entry
108816931 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 52
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108816931
03041 Spliceosome [BR:
rsz03041
]
108816931
03036 Chromosome and associated proteins [BR:
rsz03036
]
108816931
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108816931
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108816931
mRNA cycle factors
Common to processing body (P body) and stress granule
108816931
Spliceosome [BR:
rsz03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108816931
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108816931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108816931
NCBI-ProteinID:
XP_018444995
UniProt:
A0A6J0KAC5
LinkDB
All DBs
Position
7:complement(16635063..16638651)
Genome browser
AA seq
641 aa
AA seq
DB search
MSSSWADVSESERAQSGWGYGNSRPSRTNYVPPHLRGRGPSPGSDRGGYGGGGGGYGGRG
GQGYGGRGGGGYVGRGGGGWNNRSGGWDRRDTETNPFGNDGNAEPAVNEQDNTGINFEAY
EDIPIETSGDNVPPPVNTFAEIDLGEALNLNIQRCKYVKPTPVQRNAIPILAAGRDLMAC
AQTGSGKTAAFCFPIISGIMKEQQNVERPRGVRGVYPLAVILSPTRELACQIHDEARKFS
YQTGVKVVVAYGGTPVNQQIRELERGVDILVATPGRLNDLLERGRVSLQMVKYLALDEAD
RMLDMGFEPQIRKIVQQMDMPPPGVRQTMLFSATFPREIQRLASDFLSNYIFLAVGRVGS
STDLIVQRVEFVHDSDKRSHLMDLLHAQRENGNQGKQALTLVFVETKKGADSLENWLCMN
GFPATTIHGDRSQQEREVALRSFKTGRTPILVATDVAARGLDIPHVAHVVNFDLPNDIDD
YVHRIGRTGRAGNSGLATAFFNDNNTSMAKPLAELMQEANQEVPDWLSRYASRASFGGGK
NRRSGGRFGGRDFRRESFGQGGGGGGYYGGGGGGGYGGYGAMPGGYGNAPGGGYGNVPGG
GYGAVPGGYVPYGRGGGAYYGGGYGAVPNQGYGPGVASAWD
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgagttcatcatgggctgatgtttctgaatcggagagagcacaatctggttggggttac
gggaactctcgtccctcgcgaaccaactacgtgcctcctcatcttaggggacgtggacct
tcacctggtagtgatcgtgggggatatggtggtggtggtggtggttatggtggtagagga
ggccaaggttatggtggccgaggagggggaggctatgttggtagaggaggaggtggttgg
aataacagaagtggaggttgggaccgtagggatactgaaactaacccgtttggtaacgat
gggaatgcagagccggctgttaacgagcaggacaacacagggattaactttgaggcgtat
gaagatatccccatcgagacaagtggggataatgtgccgcctcctgttaatacattcgct
gagatagaccttggagaggctctgaatctgaatatccagaggtgcaagtacgtgaagccg
acccctgtgcagcgtaatgcaatccccatcttggctgctgggagggatttgatggcttgt
gctcagacggggtctgggaaaacggctgcgttttgttttcctattattagtgggattatg
aaggagcagcagaatgtggagaggccacgtggagttcggggagtgtatcctcttgctgtc
attctctcaccaacaagggaattggcatgtcagatacatgatgaagccagaaagttctcc
taccaaactggtgtgaaagttgttgttgcttatggaggaacaccagtcaaccaacagata
cgggagcttgaaagaggagttgatattcttgttgcaactcctgggagattaaatgatttg
cttgagagaggtagagtctcactacagatggtaaaatacttagcactcgatgaggctgac
aggatgctggacatgggttttgaaccgcaaatcaggaagatcgttcagcagatggatatg
cctcctcctggtgtccggcagacaatgctattcagtgctacatttcccagagagatacag
agacttgcatctgattttctttcaaattacatatttctggctgttgggagagtgggttca
agtacggatttgattgtccaaagagtagagtttgtccacgactctgacaaaagaagccat
ctgatggaccttcttcatgctcagagggagaatggtaaccaaggaaagcaagctttgact
ctggtatttgtggagacaaagaagggggctgactctttggagaactggttgtgcatgaac
ggattcccagcaacgaccatccacggtgataggtcacagcaggaaagagaagtggcactg
agatcattcaagactgggcggacacctattttggttgcaactgatgtggcagcacgtggt
cttgacattccacacgtggctcatgtggtcaactttgatctaccaaacgacatcgatgac
tatgtccaccgtatcggacgaacagggcgtgcaggcaattcaggactagcaactgctttc
ttcaatgacaacaacacatcaatggccaagccactcgctgagcttatgcaagaagcaaac
caggaggtccctgactggctgagtcggtatgcatctcgtgcttcatttggaggtggaaag
aaccgacggtctggtgggcggtttggtggccgtgacttcaggagagaatcttttggccaa
ggtggaggcggtggtggctactatggtggtggcggtggtggtgggtatggtggatatgga
gcaatgcctggtggatatggaaacgcaccaggtggtggatatggaaacgtaccaggtggt
ggatatggagccgttcctggtggttacgtaccttacggtagaggcggtggtgcttactac
ggtggaggatatggagccgttcctaaccaaggctacggccctggagtggcaagtgcttgg
gactaa
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