Raphanus sativus (radish): 108816954
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Entry
108816954 CDS
T06014
Name
(RefSeq) polyadenylation and cleavage factor homolog 5-like
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108816954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108816954
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108816954
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108816954
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
108816954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
zf_UBZ
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
108816954
NCBI-ProteinID:
XP_018445027
UniProt:
A0A6J0KAM9
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All DBs
Position
7:9607240..9608726
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AA seq
410 aa
AA seq
DB search
MSSFVHQRNTHRHAGNTLKRPLDNPGGYGGRIGGFQEEDRSRYAPPPQKRPRYQTQPQFQ
SGTPPLYNRRHQHDDSNLSRVSNYGDVINSNSSNISTFTHRNSQSNADYQKPYGYGNPNP
QSVPLPLPYRKLDGFDSLPEWVPNFAPNTNRDVTGVRFNANPPLSQAPPVFTNLPNSMPL
THSNMDSVVSQSLPQQPIVSKELADLLSVLNNKEKEKECDLGLDFDKINLNVRHESVVKS
LYSDMPRQCSSCGVRFKCQEEHSKHMDWHVRKNRMAKDATKAMTTRVSQKPKKSRDWFAS
SSLWLSAATGATVEGAKPAFGGTQKTKEEEKQQQHMVHADENQKMCALCLESLEEFFSHE
EDDWMYRDAVYLHMNGSGPIAHVKCMPEPRKAPAKESTKPVMVAASAVVC
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcattcgttcatcagagaaacacccatcgccacgctggaaacacgttgaagaga
ccgctcgacaaccccggtggctacggcggaagaatcggaggtttccaagaggaggatcga
agccgttacgcgccgccgcctcagaaacgccccagataccagacgcaaccgcaattccaa
tcggggactcctcctctgtataatcgtcgtcatcaacatgatgatagtaacttgtctagg
gtttctaattacggtgatgtgatcaattctaattcgagtaatatctctacttttacccat
cgtaattcgcaatctaacgctgattatcagaaaccttacggttatggaaaccctaatccc
caatcggttccgcttcctttgccttatcgcaaacttgacggtttcgattcgttaccggaa
tgggttcctaatttcgcacccaacacaaaccgtgacgtaaccggagtccggtttaatgct
aatccaccactttctcaagcaccacccgtgtttacgaatttgccaaattcaatgcctttg
actcattcaaacatggattctgttgtgtctcaatcgttaccacaacaacctattgtgagc
aaagaattggcagatttacttagcgttcttaacaacaaagaaaaagagaaagaatgtgat
cttgggcttgattttgataaaattaatcttaacgtgcgacatgaatctgttgttaagtct
ctttattccgacatgccgaggcagtgttcgtcgtgtggtgttagattcaagtgtcaagaa
gagcacagcaagcacatggactggcatgttaggaagaacaggatggctaaagacgcgacc
aaggccatgactacgagggtgagccagaaaccgaagaagtcgcgtgattggtttgcgagc
tcgtctctttggctcagtgcagcaacaggagcgacggtcgaaggggctaaacctgctttt
ggaggaacccagaagactaaagaagaggagaagcagcagcaacatatggtgcatgctgac
gagaaccagaagatgtgtgcgttgtgcttggaatcgttggaagagtttttcagccatgaa
gaagatgattggatgtacagagatgctgtctacttgcacatgaacgggtctggtcctata
gctcatgtcaagtgtatgcccgaaccacgaaaagcgcctgcaaaggaatcgacaaagcca
gttatggttgctgcgagtgcagttgtctgctga
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