Raphanus sativus (radish): 108817026
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Entry
108817026 CDS
T06014
Name
(RefSeq) vacuolar protein sorting-associated protein 35B
KO
K18468
vacuolar protein sorting-associated protein 35
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108817026
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108817026
Membrane trafficking [BR:
rsz04131
]
Endosome - Lysosome transport
Rab GTPases and associated proteins
Retromer subcomplex
108817026
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Vps35
Motif
Other DBs
NCBI-GeneID:
108817026
NCBI-ProteinID:
XP_018445114
UniProt:
A0A6J0KDL4
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Position
7:complement(8262836..8269505)
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AA seq
792 aa
AA seq
DB search
MRRLAGAEDEEKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQK
YYDLYMRAFDELRQLEVFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKSK
QAPSKDVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSEYEGDANTVMDAVEFV
LQNFTEMNKLWVRIQHQGPGTVREKQEKERNELRDLVGKNLHVLGQIEGVDLEMYKETVL
PRVLEQVVNCKDELAQYYLMECIIQVFPDEYHLQTLETLLAACTQLMPTVDTKIVLTQLM
DRLSNYAASSPDVLHEFLQVEAFAKLSNAIGKVIDTQIEMPIVGAMTLFVSLLTFTLRVH
PDRLDYVDQILGACVVKLSSVPKLEDARAMKQVVALLSAPLEKYNDIVTALTLSNYPRVM
DHLDDGTNKVMAMLIIQSIMKNNSCISTADKVEVLFELIKGLIKDLDGTDTEELDEEDFQ
EEQNSVARLIHMLDNEEPEEMLKIICVVRKHLMTGGTRRLPFTVPPLVFSALRLVRQLES
QDGDVTGEDVPATPGKIFQILNQTIEVLSSVPCPELALRLYLQCAEAASDCDLEPVAYEF
FTQAFILYEEEIADSKAQVTAIHLIIGTLQRINVFGVENRDTLTHKATGYSARLLKKPDQ
CRAVYACSHLFWVDDIDGIKDGERALLCLRRALRIANAAQQMANATRGSSGPVTLFVEIL
NKYIYFYEKGNPHITPSDVQSLIELINTEMQSDDNGNRRTHSDPFFTSTLRYIKFQKQKG
GLMGDKYDLIKL
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atgaggaggctagccggagcagaagacgaggaaaaatggctggcggaaggaatcgccgga
atccagcacaacgctttcttcatgcatcgcgccttggacgcgaataatctgagagaagtc
ctaaagtactcggctctcatgctctctgagctccgcacctccaagctatctcctcagaaa
tactacgatctctatatgagagctttcgatgagttgaggcagctggaggttttcttcaag
gatgagagcaggcatggattaccggttgtggatttgtatgagcttgttcaacatgccggc
aacatattgcctcggatgtatctcctgtgtacagtagggtctgtttatatcaaaagcaag
caagctccttccaaagatgttcttaaggatcttgtggagatgtgtcgaggtgttcaacat
cctattcgtggtctttttttgaggagttatcttgcacaagtcagcagggataagttacct
gagattggctcagaatacgaaggagatgcaaatactgtgatggatgctgtggagtttgtg
ctgcaaaatttcactgagatgaataagctctgggtgcgaattcagcatcagggacctgga
acagttcgagaaaagcaggagaaagagaggaacgaacttcgtgatcttgttggaaaaaat
ctgcatgttctaggacagatcgaaggagttgaccttgagatgtacaaagagactgttctt
cctagggtcttagagcaggtcgtcaactgtaaagatgagctggctcagtactatctgatg
gagtgcatcatccaagtctttcctgatgaatatcatttgcagactcttgagaccttattg
gctgcttgtacccaactgatgccaacagtcgacaccaaaatagtgttaactcaattgatg
gaccgcttgtcaaattatgctgcctcaagtccagatgtgttacacgaatttttgcaagtg
gaagcttttgctaaattgagcaatgcaattggaaaggtgatagatacacagattgagatg
cctattgttggagctatgacgctgtttgtctctcttctgacttttaccctccgtgttcac
ccagatcggcttgactatgtggatcagatattgggagcatgtgtagttaagctttccagt
gtgcccaagctggaggacgcccgcgcaatgaaacaagttgttgcacttctgagtgctcct
ttagaaaaatataatgacatagttacagctcttacactgtcaaattatccacgtgtcatg
gatcatcttgatgatggaacgaataaagtaatggcgatgctaattattcaaagtataatg
aaaaacaattcgtgtatttcaactgctgataaggttgaagtgctgtttgaattgataaaa
ggacttattaaggatttggatggaacagatacagaggagcttgatgaggaggatttccag
gaggaacaaaattcagttgcccgactgatacatatgcttgataatgaagaaccagaagag
atgctaaagattatatgtgttgtgagaaagcatcttatgacaggaggaactcgacgccta
ccttttaccgttcccccacttgttttttctgcactcaggttggtcaggcagctagaatcc
caggatggagatgtaactggagaagatgtcccagcaaccccggggaagatttttcagatt
ctcaaccagacaatcgaggttctctcctcggttccatgtcctgaactggctctaaggctc
tacctccagtgcgccgaggccgcaagtgactgtgatcttgagcctgttgcttatgagttt
ttcacccaagcattcatactatacgaggaagagatcgcggactccaaggcacaggtaact
gcgattcatctgattattggaaccttgcaaaggatcaatgtctttggtgttgaaaacaga
gacaccttgacccataaagcaaccgggtactcagcaaggcttttaaagaagcctgatcaa
tgtcgagcggtttatgcatgctctcacctcttctgggtcgatgatatagatggcatcaaa
gacggagaaagagctcttctctgtttaagacgtgcactgaggatagcaaacgcagctcaa
caaatggctaatgcgacccgaggtagcagcggaccagtcacgctgtttgtcgaaatcttg
aacaagtacatatacttctatgagaaagggaatccacatataactccatctgatgtacag
agcctcatagagctgatcaacaccgagatgcaaagcgacgacaacggtaacagaagaaca
cactcagatcccttctttacaagtacattgcgttacataaagttccagaaacagaaaggt
ggtttaatgggtgacaaatatgacctcatcaagttgtga
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