Raphanus sativus (radish): 108817106
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Entry
108817106 CDS
T06014
Name
(RefSeq) SWI/SNF complex component SNF12 homolog
KO
K11650
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily D
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108817106
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108817106
03036 Chromosome and associated proteins [BR:
rsz03036
]
108817106
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108817106
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108817106
PBAF complex
108817106
GBAF(ncBAF) complex
108817106
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIB
YEATS
Motif
Other DBs
NCBI-GeneID:
108817106
NCBI-ProteinID:
XP_018445210
UniProt:
A0A6J0KCJ7
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All DBs
Position
7:3144002..3146377
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AA seq
549 aa
AA seq
DB search
MSGNNNNNNPQKPQGSSSAPSPFGNPGMQASASSVPGNQGFTQQSHMAAPNFPAQFQFSQ
AQALAHAQAQSKAQAQFQAQMQAGMSMNQGQQGGGSSQGGIGVLGSSSSPSMTPGSLNMK
RFQQRPSMRPPSGFPASNNNTISPMRTMELTPAARKKKMKLPEKSLQERVAAILPESALY
TQLLEFESRVDAALSRKKVDIQEALKNPPCTQKTLRIYVFNTFANQQNNTIPGNPNADPP
TWTLKIVGRILEDGVDPDQPGFVQQANPSHPKFSTFFKKVIVNLDQRLYPENSAITWESA
RSPAPQEGFEIKRKGNQEFAATIRLEMNYVPEKFKLSTALMDVLGIEVETRPRIISAIWH
YVKARKLQNPNDPSFFNCDAALHKVFGEEKVKFTVVSQKISHHLSPPPPIHLEHKIKLSG
NNPAISACYDVLVDVPFPIQRDLNNLLANAEKNKEIEACDEAICAAIRKIHEHRRRRAFF
LGFSQSPVEFINALIESQSKDLKVVAGEASRNAEKERRADFFNQPWVEDAVIRYLNRKPA
AGNEGPGTW
NT seq
1650 nt
NT seq
+upstream
nt +downstream
nt
atgtcgggtaataacaacaacaacaatccacagaagcctcagggctcttcttctgcgcct
tcaccattcggcaaccctgggatgcaggcctctgcatcatctgttcctggaaaccagggc
ttcactcagcagtctcacatggcggcacctaacttcccagctcagtttcagttctcacag
gcccaggccttggcccatgctcaagcccagtctaaagctcaagctcagttccaagctcag
atgcaagcagggatgtcgatgaaccaaggacaacaaggcggcggctcctcccagggggga
attggtgtgttgggttcgtcttcttccccttccatgactcctggtagcttgaacatgaag
aggttccagcagagaccctcgatgcgacctccttctggcttccccgccagcaacaacaac
actatctcccccatgaggacgatggagttaacccccgcggcgaggaagaagaaaatgaag
cttcctgagaagtctctgcaggagcgggtggcggcgatcttgcccgagtctgcgttatac
acgcagcttcttgagtttgagtcaagagtcgatgctgctttgagtaggaagaaagttgac
atccaggaggctctcaagaaccctccttgcacgcagaagacgcttaggatctacgtgttc
aacacgtttgcgaatcaacagaacaacaccatccctgggaacccgaatgctgacccgccc
acgtggactctcaagatcgttggtaggatcttggaagacggggtggatccggaccagcca
gggtttgttcagcaagcaaacccatctcatcccaagttctcaacctttttcaagaaggtg
atagttaacctggaccagaggctgtatcctgagaactcggcgatcacatgggagagcgct
cgttcacctgctcctcaggaagggtttgagataaagaggaaagggaatcaggagtttgca
gctacgattcggttggagatgaactacgtccctgagaagttcaagctttcaactgcattg
atggatgttctcgggatcgaggttgaaacaaggccaagaatcatctctgcgatatggcat
tacgtcaaggcgaggaaactgcagaacccaaacgacccttctttcttcaactgtgacgct
gcacttcacaaagtgtttggggaagagaaggtgaagttcacagtggtctctcagaagata
tctcatcacttgtcacctccaccgccgattcacttggaacacaagatcaagctgtcggga
aacaacccggccatatcagcgtgttacgatgtcctggtggacgtacctttcccgattcag
agggatctgaacaacctgttggccaacgcagagaagaataaagagatcgaggcttgtgat
gaagctatatgtgcagccataaggaaaatccacgagcataggaggagacgtgcttttttc
ttggggttcagccagtcgccagttgagttcataaacgcactgattgaatctcagagcaag
gatctgaaggttgtagcgggagaagctagtcgaaatgctgagaaagaacgtcgagcagac
ttcttcaatcaaccttgggtggaagatgcagtaatacgttacttgaaccggaagccagca
gctgggaacgaaggaccagggacgtggtga
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