Raphanus sativus (radish): 108817142
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Entry
108817142 CDS
T06014
Name
(RefSeq) polyadenylate-binding protein 5
KO
K13126
polyadenylate-binding protein
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108817142
09123 Folding, sorting and degradation
03018 RNA degradation
108817142
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108817142
03041 Spliceosome [BR:
rsz03041
]
108817142
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108817142
mRNA cycle factors
Stress granule specific factors
108817142
Spliceosome [BR:
rsz03041
]
Complex C
Other components
Complex C specific factors
108817142
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_5
RRM_7
RRM_Nup35
RRM_RdRP1_2
RBD_DEAH11
RRM_occluded
RRM_YTH1
DUF2188
Motif
Other DBs
NCBI-GeneID:
108817142
NCBI-ProteinID:
XP_056846257
UniProt:
A0A9W3CKX1
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All DBs
Position
7:complement(11668686..11671537)
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AA seq
662 aa
AA seq
DB search
MAAAVASGIAPTTAMVDQVPNQPAATVASPHATQVAAVAAAAAEALQTHPNSSLYVGDLD
QSVNEAHLLDLFNQVAPVQTVRVCRDLTRRSLGYAYVNFANPDDAMRAMDILNYTPIRER
PIRIMRSNRDPSTRLSGKGNVFIKNLDGTIDNKALYDTFSSFGTILSCKVAMDGTGKSKG
YGFVQYEKEETAQAAIDKLNGMLLNDKQVFVGPFVRRQDRTRESGAVPRFTNVYVKNLPK
EITDEELKKTFGKYGEISSAVVVKDESGNSRCFGFVNFESPEAAAVAVEKMNGISLGEDV
LYVGRAQKKSEREEELKRKYEQERLEKSNGTNLYVKNLDDGVNDDEKLKEMFSEYGTVTS
SKVMMNPEGLSRGFGFVAYSNPEEALRALNEMNGKMIGRKPLYIAFAQRKEERRTHLQTV
FSMRPNGPMGGFHHHPTGGPAAGPHHQIYMGQNGQGMVPSQPMGYGYQLQFMPGVRPGAG
PANYMMPYPLQRQNHPGPRVGFRRGAPNMQHHFQQQPQIMQHNGRYMGGVGNMMNRVEAS
APQGIIPLDASAISHNASQNQQRPALLPISKLTSALALASPANHSQILGEQLYPLVEKQE
PVHVAKVTGMLLEMDQAEILHLLESPEALKAKVAMALDVLRLSANPTAVSSVDDQFAPSS
TE
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcggttgcatctggaattgccccgacgacagcgatggttgatcaagtcccc
aatcaaccagcggctacggtcgcctctcctcacgcgactcaggtagctgccgtcgcggct
gcggcggccgaggcgttacaaacgcaccctaactcctccctctacgtcggagatttggac
caaagtgtcaacgaggcacatctgttggatctgttcaaccaagtggctcctgtccagaca
gttagggtttgtcgcgacttgactcgtcgttctcttggatacgcttacgtcaacttcgcc
aatcccgatgatgccatgcgagcaatggatattctgaactatactccgatcagagagaga
cccatcaggatcatgcgttcgaaccgtgacccgagcacgagactgagcggaaaaggcaat
gttttcatcaaaaacctggacgggaccatcgacaacaaagccctgtacgacaccttctcg
agtttcgggaccattctctcgtgcaaggtagccatggacgggacggggaagtcgaaaggc
tacggcttcgttcagtacgagaaggaagaaaccgctcaggcagccatcgacaagctcaac
gggatgctgctcaacgacaagcaagtctttgtgggaccctttgtccgacgtcaggacagg
actcgcgagagcggtgcggtcccgcgtttcactaacgtctacgtgaagaatcttcctaag
gagatcactgacgaggagctcaagaagacgtttgggaagtacggagagatctccagtgcg
gttgtggtgaaagatgagagtgggaactcgaggtgtttcgggtttgtgaatttcgagagc
cctgaggcggctgcggtagcggttgagaagatgaatgggatcagtcttggtgaggatgtg
ttgtacgttgggagggcgcagaagaagtctgagagggaagaggagctgaagaggaagtat
gagcaagagaggttggagaagtctaacggaaccaatttgtatgtgaagaatcttgatgat
ggtgtgaatgatgatgagaagctcaaggagatgttctctgagtatgggactgtgacctca
agcaaggtcatgatgaacccagaaggtttgagcagagggtttggttttgttgcttactcc
aatcctgaagaagctttaagagctttgaatgaaatgaatgggaagatgataggaaggaaa
cctctttacattgcttttgctcaacgcaaggaagagaggaggactcatcttcagactgtg
ttttctatgagaccaaatggaccaatgggtgggttccatcatcacccaacaggtgggcca
gctgcagggccacaccatcaaatttacatgggccagaacggtcaaggtatggtgccttca
cagcctatggggtatgggtaccaacttcagttcatgcctggtgtgcgtccgggtgctggc
ccggctaactacatgatgccttaccctcttcagaggcaaaaccaccctggtccccgtgtt
gggttcaggcgtggtgctcctaacatgcagcaccacttccagcagcagccacaaattatg
cagcacaatggaagatatatgggaggtgtgggtaatatgatgaatcgtgtggaagcatct
gctccacaaggcatcataccattggatgcatctgcgatctctcacaatgcttctcaaaac
caacagaggccagctctcctccccatttctaagctcacttctgccttggcattggctagc
cctgccaatcactcacagattcttggagagcagctttacccacttgtggaaaagcaggag
ccagttcatgtggccaaagtgacagggatgttgctggagatggaccaagctgagatcttg
caccttcttgagtcacctgaagctcttaaggccaaagtggctatggctctggatgtactc
aggctctctgctaatccgacagctgtttcttccgttgatgatcagtttgctccctcctca
acggagtga
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