Raphanus sativus (radish): 108817236
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Entry
108817236 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108817236
09122 Translation
03013 Nucleocytoplasmic transport
108817236
03015 mRNA surveillance pathway
108817236
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108817236
03041 Spliceosome [BR:
rsz03041
]
108817236
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108817236
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108817236
Spliceosome [BR:
rsz03041
]
Complex C
Other components
EJC/TREX
108817236
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108817236
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
108817236
NCBI-ProteinID:
XP_018445379
UniProt:
A0A6J0KEC3
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All DBs
Position
7:4057020..4060830
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AA seq
427 aa
AA seq
DB search
MGDARDNEAYEEELLDYEEEDEKVLDSGNKVNGDAVKKGYVGIHSSGFRDFLLKPELLRA
IVDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALIL
CHTRELAYQICNEFVRFSTYLPDTKVSVFYGGVNNKIHKELLKNECPHIVVGTPGRVLGL
ARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVC
KKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSR
AGELNKLLIECNFPSICIHSGMSQEERLTHYKSFKEGHKRILVATDLVGRGIDIERVNIV
INYDMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQDRFEVDIKELPEQID
TSTYMPS
NT seq
1284 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgctagggacaacgaagcctacgaggaggagctcctggactatgaggaagag
gatgagaaggtcttagattctggaaataaagttaacggcgatgccgtgaagaaaggttac
gtgggaatacatagttctggattcagagacttccttttgaaaccggagcttctccgagct
attgttgactctggatttgagcatccatctgaagtgcaacatgaatgtatccctcaagct
atcttgggcatggatgttatctgccaagcaaaatctggtatggggaagactgctgtattt
gtgctgtctactctgcaacagatcgagccttctcctggccaggtgtctgcactaatcttg
tgccatacaagggagttagcttaccagatctgcaatgagtttgtgcgtttcagtacctat
ctgcctgatacaaaggtttcagtgttctatggaggagtcaacaataaaattcacaaagaa
ttgctgaagaatgaatgtcctcacattgttgttggaacacctggtcgggtccttggactc
gccagggacaaagatctctctttgaagaatgtgaggcactttattctcgacgagtgtgat
aaaatgctggagtctctagacatgcggagggatgtgcaggagattttcaagatgacacca
cacgacaaacaagtcatgatgttctcagcaacgctcagcaaagagatacgcccagtctgc
aagaaatttatgcaagatccaatggaaatatacgtcgatgatgaagccaaattgactctt
catgggcttgtccagcactacatcaagctgagcgagatggagaagaaccgcaagttgaat
gaccttctggacgcattggacttcaatcaagttgtcatatttgtgaagagtgttagcaga
gctggggagctgaacaagttgcttattgaatgcaatttcccctcaatatgcattcattct
ggcatgtctcaggaagagaggctgactcactacaaaagtttcaaggaagggcacaagaga
attcttgtggcgacagatttggtagggagaggcattgacattgagcgtgtcaacattgtt
atcaattacgacatgccagattctgctgatacatatcttcacagggtcgggagagctggt
aggtttggaacaaagggtcttgcaataacatttgtggcatcagcttcagactcagaagtt
cttaatcaggtgcaagacaggtttgaggttgatattaaggaacttcctgagcagattgat
acttccacatacatgccttcttaa
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