Raphanus sativus (radish): 108817317
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Entry
108817317 CDS
T06014
Name
(RefSeq) F-box protein SKP2B
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108817317
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108817317
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108817317
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GFIT
Motif
Pfam:
LRR_6
LRR_4
F-box-like
LRR_At5g56370
F-box
LRR_NXF1-5
LRR_At1g61320_AtMIF1
Sulfolobus_pRN
LRR_8
Motif
Other DBs
NCBI-GeneID:
108817317
NCBI-ProteinID:
XP_018445475
UniProt:
A0A6J0KBT7
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Position
7:13808008..13810597
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AA seq
362 aa
AA seq
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MVSQEGSATLNRCFEKMKEINMERIVFTGWKDIPAELLMRILNLVDDRTVIIASGVCSGW
RDAISFGLTRLSLSWCKKNANSLVLSLAPKLVNLQTLVLRQDSPQLEDNAVEAIANHCHE
LQDLDLSKSLKLTDHSLYALARGCTNLTKLNLSGCTSFSDTALAYLTRVCRKLKVLNLCG
CVEAVSDNALQAIGENCSQMQSLNLGWCENVSDDGVMSLSYGCPDLRTLDLCGCVLITDE
SVVALANKCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKHDMRRSVKKGKFDEEGLRSLN
ISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLTSVHCACILQTHRTHTAYPHP
AH
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atggtgagccaagaagggtcggcaacacttaaccgatgcttcgagaagatgaaggagatc
aatatggaaagaattgtgttcactgggtggaaagatatccctgctgagcttctgatgagg
atcttaaaccttgttgatgatcggacggtcatcattgcttctggtgtttgcagtggctgg
agagatgctatttcctttggtctcactcgtctctccctctcttggtgcaagaagaacgcg
aacagtttggttctgtctcttgctccaaaactcgttaaccttcagactctggtactgaga
caggacagccctcagcttgaggacaacgcagtggaagctatagcgaatcactgtcacgag
ctacaagatcttgaccttagcaaaagcttgaaactcactgaccattccctctatgctctg
gctcgcggctgcactaacctcactaaactcaaccttagcggctgcacgtcattcagcgac
actgctttggcctatttgacaagggtttgccggaagctcaaagttctaaatctttgtggc
tgtgttgaagctgtatctgacaatgcattgcaggctattggagaaaactgcagtcagatg
caatcactaaacttgggatggtgtgagaatgtaagtgatgatggagtcatgagtttatct
tatggctgtcctgatctaagaacccttgatctttgtggatgtgttcttattacagatgag
agtgtggtggctttggcgaataagtgtgtacacttgaggtcattggggctatactattgc
aggaacataactgacagagcaatgtactcactggctcagagtggagtgaagaacaagcac
gatatgaggcggtcggttaagaaaggcaagttcgatgaagaaggactaagaagcctcaac
attagccaatgtacttaccttacaccttcagctgttcaagctgtctgcgatacattccct
gcgctccacacttgttccggcaggcattcgcttgtcatgagtggttgtctgaatttaaca
tcggttcactgtgcatgtatcctccagacccaccgcacccacacagcttaccctcacccg
gctcattga
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