Raphanus sativus (radish): 108817426
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Entry
108817426 CDS
T06014
Name
(RefSeq) sister chromatid cohesion protein SCC2
KO
K06672
cohesin loading factor subunit SCC2
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
rsz03036
]
108817426
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Adherin complex
108817426
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nipped-B_C
Cohesin_HEAT
PDS5
PHD
Cnd1
PHD_2
IFRD
zf-HC5HC2H
PHD_4
zf-RING_16
Motif
Other DBs
NCBI-GeneID:
108817426
NCBI-ProteinID:
XP_018445607
UniProt:
A0A6J0KC99
LinkDB
All DBs
Position
7:2708680..2718272
Genome browser
AA seq
1851 aa
AA seq
DB search
MSSNPSSSGWDSTSNSTQFGIGLANTVQSEVASHLPLPSLPIFCGSTQPGDFKLFDEVGD
GISGGTRSLNRGEILSQSSRIANMLEETDVSYLDLRNEGRSLNCNSTETLQLYDQVLRCN
PGAFEYATPGPTCEPVCTNEELQQKSPESSVPVKIQRQADHHLGRSIRPEPVKRVLRSNH
VEDHSWHSEPLINQSPRDDITTLESRPETAKMNESSASKKSKGKKKRKDGAGPGASSVQP
DSSVLQESIVQSFCEMLEDFCGRAEIPGDDRDGAEWSVVPVDEVRVLVAELMTIRSKMLL
HMVPVDILSRLLHTLDHQIHRAEGLSINSEHSDSDSIGLVFGALESIHASLAVMANIDMP
KQLYKEEVIERILEFSRHQMMAVMSAYDPSYRNASKPADNVAFEGDDDDDPDPDMSSASK
RRRTVKSGKVKKSGVNRISGAVNTALQKLCTILGLLKDLLFVERLSDSCILQLLKTSSTT
FLVENIQLLQLKAISLIGGIYNSYAHHRTYVIDELSQLLWKLPSSRRVLRTYLLPDEEQK
QIQMVTALLIQLVHNSTSLPETLRQASGANSILETPVDDGYLIKCHEAVTETCCLFWTRV
LERFASAKAQDASEIKVMIENLVNDLLTALNLPEYPSVSPILEVLCVILLHNGGLKSKDV
SARSMAIDLLGTIAARLKQDAVLCSGDRFWALLESDTETKLDQSVAKDCALCLGKRAGNL
LGCQICQRRFHADCLGLKELDIPSRNWHCPFCISKRQLLVLQSYCKTDTKGTGMLESEED
PNVVTQTEVVQQMLLNYLQDAGSADDVHTFICWFYLCLWYKDVPKSQKNFKYYIARLKAK
SIIRNSGATTSFLTRDAIKRITLALGLNSSFSRGFDKILHMLLASLRENSPVIRAKAMRA
VSIIVEADPEVLCDKRVQLAVEGRFCDSAISVREAALELVGRHIASHPDVGLKYFEKVAE
RIKDTGVSVRKRAIKIIRDMCTSNPNFSEFTSACAEILSRISDDESSIQDLVCKTFYEFW
FEEPPGHHTQFASDASSIPVEVETKTNQMVGLLRRTPNHQLLVTIIKRALALDFFPQATK
AAGINPVALASVRRRCELICKCLLEYILQVEELSRGEGEVQVLPYVLALHAFCLVDPGLC
TPASDPTKFVITLQPYLKSQVDSRIGAQLLESIIFIIDSVIPLIRKLPLSVTEDLEQDLK
HMIVRHSFLTVVHACVRCLCSVSKLSGKGVNVVEHLLQFFLKRLETQGSDNNQIAGRSLF
CLGLLIRHGNSLISTSGGRKFNLSGCLSLFKRHLRVEDFSLKVRSLQALGFILIARPEYM
LEEDIGKIIESTLSDEANGRMKMQALQNMYDYLLDAEKQLGSDKAGDVTVNPIEQGGNTV
PVAAGAGDTNICGGIVQLYWDKILGRCLDFDDQIRQIALKIVEVVLRQGLVHPITCVPYL
IALETDPLEANQKLAHHLLMNMHEKYPAFFESRLGDGLQMSFIFMQSISQVSSESNQNPQ
QKGSTNISGKNDHTSSTLTQARLGVSRIYKLIRGNRISRNKFMTSIVRKFDNPTWSVSVI
SFLMYCTETLALLPFTTPDEPLYLVYSINRVIQIRAGAIESNLKALLHKDSAKSQHGNGT
YQQNPIHGQIHMMDLNTRMQEEQTHWNSYGHPAPIDLNGIVYQDPRDQFNSYQTHNGEAN
VHKVTSSDPPALSTDDLQKIQVDCLSAIALQLLLRLKRYLKVTYSLNDERCQAYSPTEPL
KPGDPLSKQNVAFDLSEIRTDLPSTYQDLVLRYQEFKNAMREDTLDYTIYSSNVKRKRPT
PRKSSRSAKKAVAYNEDDDDDDDGDRGWNGGGGSGMTSRRLSYSTRNSNRR
NT seq
5556 nt
NT seq
+upstream
nt +downstream
nt
atgagcagcaacccaagcagttccggatgggattcaacttcgaattcgactcagttcggg
atcggtttggccaatacagtgcagtcggaggttgcttctcacttgcctctcccctcgtta
ccgatattctgcggctcgactcagcctggggatttcaagctgttcgatgaggttggcgat
ggtattagcggcggcaccaggtcgttgaatcgcggcgagattctctctcagtccagtaga
atcgcgaacatgcttgaagaaactgacgtttcttacctcgatcttagaaacgagggtagg
tcgctgaactgtaattccacggagactttgcagttatatgaccaagttctacgatgcaat
cctggagcatttgagtatgccacccctggcccgacctgcgaaccagtctgtaccaatgaa
gagcttcaacagaaaagtcccgagtcaagtgttcctgtcaagattcagcgacaggccgac
catcatttaggtaggagtatcaggcctgagcctgtgaaaagggtattacgatcaaatcat
gttgaagatcatagttggcattccgaacctttgataaaccagtcaccgagagatgatatt
acaactcttgaatctcgacctgaaactgccaagatgaatgaatcttctgcttcgaagaag
tcaaagggcaagaaaaaacgtaaagatggtgctggccctggcgcatcttcagttcagcca
gattcttccgtgcttcaagagtccatcgttcaaagcttttgtgagatgctggaggacttc
tgtggcagagctgaaatccctggtgatgatagggatggagcagagtggtcagtcgtgcct
gttgatgaagttcgtgttcttgtggctgagttgatgactataaggtcaaaaatgcttctg
catatggtacctgttgatattctgtcgaggttattgcacactctggatcatcaaatacat
agggcagaaggcttgtccattaatagtgagcattcagattcagattcaattgggttagtt
tttggtgcccttgagtccatccatgcatcgcttgcagtgatggcaaacattgatatgcca
aagcagctctacaaggaagaggtaattgagagaattctggagttttctaggcaccaaatg
atggctgttatgtctgcttatgatccatcataccgtaacgcaagtaaaccggcagataat
gtggcatttgaaggtgatgatgatgatgatcccgatcctgacatgagctcagccagtaaa
aggagaagaacagtaaaaagtggcaaagtgaagaagtcgggagtgaacaggatctctgga
gcagtgaatactgcattacagaaactttgcactattcttggcttactcaaggacctgttg
ttcgtagaaaggttgtctgacagttgcattttacaactgttgaagacaagttctacaaca
tttttggtggaaaatatccaacttctgcaacttaaagcaattagcctaatcggtggtata
tataattcatatgctcatcaccgaacgtatgtgatagatgagttatctcaattgttatgg
aagttaccttcctcgagacgagtgctcagaacgtatcttctccctgatgaagaacagaag
cagattcaaatggtcacggctttactcattcagttggttcacaacagcacaagccttcct
gaaaccctgagacaggcttccggtgcaaactccatactggagacgcccgttgatgatggc
tacctaattaaatgtcatgaggcggttacagaaacatgttgccttttctggactcgtgtc
cttgaacgatttgccagtgcaaaggctcaagatgcctctgagataaaagtgatgattgag
aaccttgttaatgatttactgacagcattgaatcttcctgaatatccatcagtgtctccc
attcttgaggttctctgcgtcatacttctgcataatggagggttgaaatcaaaagacgtc
tctgcccggtcaatggccatcgacttgctaggtacaattgctgcaagattaaaacaagat
gctgtcctctgcagtggagacagattctgggcgctactagaatcagatactgaaaccaaa
cttgaccaatctgttgcaaaagattgcgctctctgtttaggtaaaagggctgggaactta
ttaggctgtcaaatttgtcaaaggcggtttcatgcagactgtttgggtttaaaggaacta
gacattccaagtcgaaattggcattgtcccttttgcataagcaagaggcaacttcttgta
ctgcagtcttactgcaagacggacaccaagggcactggtatgttggagtcagaagaagat
ccaaatgtggttacacagacagaagtggtgcaacaaatgctcttgaattaccttcaggat
gctggatctgctgatgatgtgcatactttcatttgctggttttatctttgcctttggtat
aaagatgtcccaaaatctcagaagaatttcaaatattacattgccagactgaaagcgaag
tcaataatccgcaactctggagcaactacttcgttcttaacaagagatgctattaagaga
attactttagctcttggactaaacagttccttttccagaggatttgataagattctacac
atgctcctggctagtttaagagagaactctcccgttattagggccaaagctatgcgagca
gttagcataattgttgaagctgatccagaggtattgtgtgataagcgtgttcagttggct
gttgaaggaaggttttgtgattctgcaatatctgttagagaagcagcacttgaacttgtt
ggtaggcatattgcatcacatcctgatgttggtttaaagtattttgagaaggtagctgaa
aggattaaggatactggagtgagtgttcgtaaacgagccatcaagataatacgtgacatg
tgtacttcaaatcccaacttctctgaatttacaagtgcatgtgcagagatattatctcgt
atcagtgatgatgagtctagtatccaggatcttgtttgcaaaaccttctatgaattctgg
tttgaggaacctccagggcatcatactcaatttgctagtgatgctagctccattccagtg
gaagtggaaacgaaaactaaccaaatggtggggttgttaaggaggaccccaaatcaccag
cttcttgtaacaattattaagcgtgccctggcccttgattttttccctcaagcaactaaa
gctgctggtatcaacccagttgctcttgcatcggtacgccggcgctgcgagctgatttgc
aagtgcttactggaatatatattacaggtagaagaactgagccgtggagagggagaggtg
caagtgcttccttatgtacttgctttgcatgctttctgtctggtggatcctgggctgtgt
acaccggcttcagaccctacgaaatttgttattaccctacagccgtatttgaagagtcag
gttgatagtagaataggagcacagttactagagagtattattttcattatcgattctgtt
atacccttgatccgcaagctgcctcttagtgtcacagaagatctggagcaagatctaaag
catatgatcgttcggcattcatttctaactgttgttcatgcatgcgttaggtgtctttgt
tctgtgagtaaattgtcgggaaaaggtgttaatgtagttgagcatcttcttcagttcttt
ttaaaacggctggagacccaagggtctgataacaaccagattgctgggcggtcccttttt
tgtcttggcttgcttattcgccatggaaactctcttattagcacctcaggtggcaggaaa
tttaatctctctggctgtctcagtttgttcaaacgacatctccgcgtggaagatttttcg
ttgaaagtcaggtctctgcaggctctaggttttattctaattgcgcggcctgagtacatg
ttggaagaagacattggaaagataatcgagagtacattatcagatgaagcaaacgggcgt
atgaagatgcaagcactgcaaaacatgtatgactaccttcttgatgcggaaaaacaattg
ggatctgataaagctggtgatgtcacggttaacccaattgagcaaggtggaaatactgta
cctgtggccgctggtgcaggtgacaccaacatttgcggaggcattgtgcagttgtattgg
gataagatattaggtagatgcttggacttcgatgatcaaattcgccagattgctctcaag
atagtggaagttgtgctacgtcaaggtcttgttcatcctattacatgtgttccttatttg
attgccctagagacagatcctctcgaggccaaccagaagctggcccatcatttactaatg
aatatgcatgaaaagtatccggcattttttgaaagtcgtctgggtgacggacttcaaatg
tcgttcatcttcatgcaatccataagccaggtctcttcagaatcaaatcaaaatcctcag
cagaagggttcgacaaacatatctgggaaaaatgatcatactagtagcactctcacacaa
gctagactcggagtctcaaggatctacaagcttatccgtggaaaccggatttctcggaac
aaatttatgacatctattgttcgcaagtttgataatccaacctggagtgtttcagtgata
tcctttcttatgtattgcactgaaacccttgcgttacttccattcacaacacctgatgag
ccgctctatcttgtatattccataaaccgagttatacaaatccgggctggtgcaatcgag
tcaaatttgaaggctttgttacataaagattccgcaaagtctcagcatggaaatggaacg
taccaacaaaatccgattcatggacagattcacatgatggacttgaacacaagaatgcaa
gaagaacaaacgcattggaattcgtatggtcatccagctcccattgatctcaatggcata
gtataccaagatccgagggatcagtttaattcatatcaaacccataatggggaagcaaat
gtgcacaaagtgacctcatctgatccgcctgcattgtccaccgatgatctgcagaaaatt
caggttgattgcttatcagctatagctttacagcttcttttgaggctcaagagatactta
aaagtcacgtacagcttaaacgatgaacggtgccaagcctattctccgacggagccattg
aagccaggagatcctctgtccaaacagaacgttgcatttgacctcagcgaaattcgcacc
gacttaccttcaacatatcaagacttggttctgagatatcaggagttcaagaacgcgatg
agagaagatacacttgactacaccatttattcatcaaacgtcaagagaaaacggccaacg
ccaagaaaaagttcaagatctgcaaaaaaagcagtggcctacaatgaggacgatgatgat
gacgacgacggtgacagaggttggaatggaggaggtggcagtggtatgacttctcggaga
ctaagctacagtaccagaaatagcaacagaaggtaa
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