Raphanus sativus (radish): 108817480
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Entry
108817480 CDS
T06014
Name
(RefSeq) protein RNA-directed DNA methylation 3 isoform X1
Organism
rsz
Raphanus sativus (radish)
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Gene cluster
GFIT
Motif
Pfam:
RDM3_C
KOW1_SPT5
KOW4_SPT5
Spt5-NGN
KOW
KOW5_SPT5
KOWx_SPT5
Motif
Other DBs
NCBI-GeneID:
108817480
NCBI-ProteinID:
XP_018445685
UniProt:
A0A6J0KCG1
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Position
7:945893..952750
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AA seq
1556 aa
AA seq
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MDRKGKGKQIAGSGSSSAGKKRKGGVEFRDEGLRINSKRKKPGVLQFFEESAEVGYYGGS
SDEDCDVNDLFNDMEDEPELETSGKDDKAGKGSSSFVFPKEEDMNEDDFDRMMEERYKPG
SGFVRYAADDVKSSIEMDALVPTAHDPPIWKIKCAIGREKHSVFCLMHKFVELRKIGTKL
RILSVFFVEHIKGFIFIEADKEQDVLEACLSLNGIYATRMVLLPKSEAPHLLTVQRKTKT
FSEGTWARIKSGKYKGDLAQVVAVSDTRGKALIKLIPRIDIAALTQKYGGGVAVQKGLNP
APRLISSSELEEFRPIIQVRRDRDTGMTFEHLDSLMLKDGFLYKKVSLDSLTSCGVKPSK
EEMLKFTPLEEKETGDVEWISEIYGEEKKKKSIPTGKGGGKGEGSGGGKGEGSGLEKGEG
SSESNSESSHDLYNLVCFSRKDFGLIVAVDDKGDGYKVLKEGSDGPVVVSVGKKELQEGP
FDSKFSALDLNNKQVSISDVVKITKGPSEGKQGVVRQVYRGIIFFYVEGEEENGGYLCCK
SQSCEKVKLFTEESNDKTGGFDASAFGDSASSPKSPLSPEKEWQPPKEKYINSNQGDKGS
MYSIGQKLRIRVGPLKGYLCRVIGLRYSDITVKLDSQHKIFTVKSEHLAEVRDRNAVPST
SVDAGMGSFKQFDMLGTEGNNGDWAKGTGTSEDNTSTWGNTAAENKPDSSGDQSGGWNSW
GKPAAPEASTVGAWGDASAPKGEASWGKEGASTSNVEDLGSWGKHGGSSDGNNKDDDSTW
GKLVEESSQKKEESSWGKKTGSDSDLGKGNGESTWGNKDGNSSASNKDGVSWGKQDKGSD
GNQGGSSWGKKDDGGSSWGKKNDSIKDDGGSSWGKKDDGGSTWGKKDEGGSSWGKKNDGI
KDDGGSSWGKKDDGGSTWGKKNDSIKDDGGSSWGKKDDGGSTWGKKDEGGSSWGKKNDGI
KDAGGSSWGKKDDGGSTWGKKDDGGSAWGNKVDEVIKDDGGSAWGQKVDATKDDGGSSWG
KKVDDSSKDDGGSSWGKKVDGNNDDGGSSWGKKDDGGSSWGKKDDGKKVDSGSSWGNKVD
SGSSWGNKDGGSSWAKKDDGGYSEQTFDRGGRGFGGRRGGGRRGGRDQFGRGRSFGHSED
NAPWSKPGGGGSSWGKDSDAGGGSSWSKQNNAGGGSGSSWNKANDSGGGSSWGKQNNSGG
GGSTWGQESNAGSGSSWGKQASDGGGSSWGKKNDAGSGGGGSTWGQDNNAGGGSSWGKQG
SDGGGSSWGKKNEAGGGGSSSWGQDTSAGGGSSWGKKSDASGGSSWGQQGDGGGSTWGKQ
NNDGGGGTSWSKEGDGGSKPWGEQSGGRGFGGRRGGGFRGGFRGGRSGRDGGRSFESSGW
KRDNQENTTWKSNQSGGGGGSDWKKSWGEDSNTAKPSDSSSAGGNWGGWDTNSKKETNAG
GGWGTDSKKETNAGGGWGTDSKKETNAGGGWGTDSKKETNAGDGDKPSNENKAAAWGTAN
VQENTGNSNDGWSKKSSDDVKTSGEADDNAWGGKTDAGTSSSSGSAWGTGAKKSGW
NT seq
4671 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtaagggaaagggaaaacaaatcgccggaagtggatcgtcttccgccggaaag
aaacggaaaggaggagtcgagtttagggacgaaggcttgaggatcaacagcaaacgaaaa
aaaccaggagttctccagttcttcgaggaatccgccgaggtcggttactatggaggtagc
tccgacgaagactgcgacgtcaatgatctctttaacgatatggaagatgaacctgagctg
gagacaagtggaaaggatgacaaggcgggaaagggcagctcttcctttgtgtttcctaaa
gaggaggatatgaatgaggatgattttgatagaatgatggaagaaagatacaaacctggc
tctgggtttgttagatatgcagctgatgatgttaaaagctccatcgagatggatgctctt
gttcctacggcccatgatcctcccatttggaaaataaagtgtgcgattggacgggagaag
cattcagtcttctgtctcatgcacaagtttgtggagctgcggaagataggcactaagcta
cggatcttgtcggtgttttttgtggagcatatcaaggggtttatcttcatagaagctgac
aaggagcaggatgttcttgaggcatgcctgagtttaaacggcatttatgccactcggatg
gtgctacttcctaaatctgaagctccacatcttcttactgtacaaagaaaaaccaaaacc
ttctctgagggaacatgggctcgtattaagagtggtaaatacaaaggagatcttgctcag
gttgtggctgtgagcgacactcggggaaaagccctgataaagttgattccaaggattgat
atagcggcacttacccaaaaatatggtggaggagttgctgtccagaaaggcctgaaccca
gctccaagattgatcagttcaagcgagcttgaggagttcagacctatcattcaagtgagg
cgtgatcgtgatactggaatgacttttgagcaccttgatagcctgatgctgaaagatggc
ttcctgtataaaaaagtatccttggattcactcacttcctgtggggttaaaccatcaaag
gaggagatgctaaaatttactcctttagaagagaaggaaactggtgacgtggagtggatt
tccgaaatttatggtgaagaaaagaagaagaaaagcattccaactggcaaagggggtggg
aaaggagaaggatcagggggtgggaaaggagaagggtcagggcttgaaaaaggagaagga
tcatcagaatccaattcagaaagtagccatgatttatataatctagtttgtttcagtcgg
aaagatttcggtctgatagtggcagtggatgacaaaggcgacggttacaaggttctgaaa
gaaggttctgatggacccgttgtagtcagtgttggaaaaaaggaattgcaagagggacca
ttcgattcaaaattttctgccctggatctgaataacaaacaagtttcgatcagtgatgtt
gtgaagattaccaaaggcccatctgagggtaaacaaggagttgtaaggcaagtgtacaga
gggatcatatttttttatgttgagggtgaggaagaaaatggaggatatttgtgttgcaaa
tcacagtcgtgtgagaaagttaagctttttactgaagagtccaatgacaagactggtgga
tttgacgcttctgcttttggagattctgcatcctctccgaaatctcctctatctcctgaa
aaagagtggcagccacccaaggagaaatacattaactccaaccaaggagacaaaggtagc
atgtattctataggccaaaagctgaggatacgtgttggtccactgaaggggtatctctgc
cgggtaatagggttgcgttattctgatatcacagtgaagcttgattctcagcataaaatc
ttcacagttaaaagtgagcatcttgctgaggttcgggacagaaatgctgtgccaagtacg
agtgtggatgctgggatgggttcctttaaacaatttgacatgcttggaacagaaggcaac
aatggagactgggcaaaaggaacaggcacgtcagaggataacacttcaacgtggggcaat
acagcagctgagaacaaacctgactcttctggtgatcagtccggtggttggaattcctgg
ggtaaaccagctgctcctgaagctagcaccgttggtgcttggggagatgcaagtgctcca
aaaggtgaagcttcttggggaaaagaaggagcttcaacttccaatgttgaagatttaggt
tcttggggaaagcatggcggaagctctgatggtaataacaaagatgatgactcaacatgg
ggtaaactagttgaagaatcgagccagaagaaagaagaatcttcttggggaaagaaaacg
ggatctgattctgatttggggaaaggaaatggagaatctacttggggcaacaaagatgga
aattccagcgcaagtaacaaagatggagtttcctgggggaaacaggataaaggctctgac
gggaaccagggaggatcttcgtggggtaagaaggacgatggaggatcatcgtggggtaag
aagaacgacagtattaaagatgacggagggtcttcttggggtaagaaggatgatggaggc
tcaacgtggggtaagaaggacgaaggaggatcatcgtggggtaagaagaatgacggtatt
aaagatgacggagggtcttcttggggtaagaaggatgatggaggctcaacgtggggtaag
aagaacgacagtattaaagatgacggagggtcttcttggggtaagaaggatgatggaggc
tcaacgtggggtaagaaggacgaaggaggatcatcgtggggtaagaagaatgacggtatt
aaagatgccggagggtcttcttggggtaagaaggatgatggaggctcaacgtggggtaag
aaggacgatgggggatctgcatggggtaacaaggttgatgaagttattaaggatgatgga
ggatcggcttggggccaaaaggttgacgctacgaaggatgatggagggtcatcttggggt
aaaaaggttgatgatagtagtaaggatgatggaggatcctcttggggcaaaaaagttgac
ggtaataatgatgatggagggtcatcttggggtaaaaaggatgatggtggatcttcttgg
ggcaaaaaggatgacggtaaaaaggttgacagtggatcttcttggggtaacaaggttgac
agtggatcttcttggggtaacaaggatggtggatcttcttgggctaaaaaggacgatgga
gggtactcagaacaaacatttgataggggaggacgtgggtttggtggtagaagaggtgga
ggtcgtcgcggtggtagggatcagtttgggaggggaagatcctttggtcactcggaggat
aacgctccatggagtaaaccaggtggaggaggttcaagctggggtaaagatagtgatgct
ggtggtggatctagctggagcaagcaaaataatgctggtggtggcagtggttcaagctgg
aataaagctaatgattctggtggtggatctagctgggggaagcagaataattctggtggt
ggcggttcaacctggggtcaagagagtaatgctggtagtggatccagctggggaaagcaa
gccagtgatgggggaggctctagctgggggaagaaaaatgatgctggtagtggtggtggc
ggttcaacctggggtcaagacaataatgctggtggtggatcgagctggggaaagcaaggc
agtgacggcggaggctctagctgggggaagaaaaatgaagctggtggtggcggttcttca
agctggggtcaagacactagtgctggtggtggatctagctgggggaagaaaagtgatgct
agtggtggttcaagctggggtcaacagggtgatggtggtggttctacttggggtaagcag
aacaacgatggtggtgggggaacaagttggtccaaagaaggtgatggcggttctaaaccg
tggggagaacagagtggtggtcgtgggttcggtggaagaagaggagggggattccgagga
ggtttccgcggaggtagatcaggtagagatggaggacggtcgtttgaatcatctggctgg
aagagagacaatcaagaaaacactacttggaagagcaaccagagtggtggtggtggtgga
tcagactggaaaaaatcatggggagaggattcaaacactgcaaagccatctgattcatca
tcagctggtggaaactggggtggctgggatactaattccaagaaagaaaccaatgctggt
ggtggctggggtactgactccaagaaagaaaccaatgctggtggtggctggggtacagac
tcaaagaaagaaaccaatgctggtggtggctggggtactgactcaaagaaagaaaccaat
gctggtgatggtgacaaaccaagcaatgaaaacaaagcagcagcttggggaaccgctaac
gttcaggagaatacaggaaacagcaatgatggttggagcaagaagtcgagtgatgatgtt
aaaacgagtggagaagctgatgataatgcatggggaggcaaaacagatgcaggaacgtcg
tcatcaagtggctcggcgtggggaaccggagctaaaaaatccggatggtaa
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