Raphanus sativus (radish): 108817619
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Entry
108817619 CDS
T06014
Name
(RefSeq) tetratricopeptide repeat protein SKI3 isoform X1
KO
K12600
superkiller protein 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108817619
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108817619
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
108817619
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_17
TPR_2
TPR_8
TPR_11
TPR_14
TPR_16
TPR_CcmH_CycH
TPR_12
TPR_19
TPR_9
TPR_7
TPR_20
BTAD
TPR_NPHP3
Y2_Tnp
NatA_aux_su
Motif
Other DBs
NCBI-GeneID:
108817619
NCBI-ProteinID:
XP_018445854
UniProt:
A0A6J0KFN2
LinkDB
All DBs
Position
7:8668511..8673825
Genome browser
AA seq
1174 aa
AA seq
DB search
MELEQLEKSVEANPNDPSLQFQLGLYLWDNGGDNSEKAAEHFVLSAKLNPDNAAAFKYLG
HYYSRVTLDRNRAAKCYQRAVLLNPNDSESGEALCDLLDGQGKEILEAAVCRDASEKSPK
AFWAFCRLGYIQLHQKKWSEAVQSLQHAIRGYPTVSDLWEALGLAYQRLGMFTAAIKAYG
RAIELDETKIFALVESANIFLMLGSYRKGVELFEQALKISPQNISVLYGLASGLLSWSKE
CIDLGAFGWAASLLEDARKAAEASTELASNMSSIWKLHGDIQLTYARCFPWSGGTENSEF
TLKTFNDSILSWRSICYSAAFSAKSSYQRALHLAPWQANLYTDIAISSDLVSSLSDDSET
SNSCSIRKLPEKMALGALFLECDNSEFWVALGCMSDNSALKLHALIRALHLDVSLAVAWA
FMGQIFRESDEMKLAKQAFDCARSIDPTLALPWAGSADTYARESTSDEAFESCLRAAQIS
PLAEYQVGLAWLALLQGNISSPQIFACIEQAVQRTPDYPESHNLHGLVCEARHNYHTAIA
SYRLALAAMSVCPDNSVKSHAGKISINLVRSLSKAGRFKESVKECANLKSKGLLDAGGLQ
IYAFSLWKIGENDSALSVVRELAGSISTMEKTSIPFPISFICSLLYCISGPDSAITSIQK
MPKDFFQSSKISFIVSAIHSLDQSDRLQSIVASTRSYITSQEEIVAMHYLIALSKLLKTG
AGEFLGFEKGIAHLRKALHMYPHSNLLRNLLGYILLAGEGTKEVCAASRCCIINVSECGN
KEGLKSALEVLGGGSVACNVIGNTAPRFSFPTCHCQSLNAPVLVVELQRFLHQEPWNSDV
RYLLILNLMQKAREQRFPRQLCSAIESLISVALSDEACSKEGEYQKFQLLLCASEISLQK
GNVAESIDHARKASSLSLPSSYLFLAHLQLCRAYAATGSTRNMQEEYRACLELKTDSNIG
LICLKLIESQFDLEADTNLLEMMSLQESPSQEKSSWKEWMAVYSLALGLVSSGRKDFSSA
EEFLAQACSLGNSESCLLLCHGAVCVELARQSNDSHFLSLAVTSLSKVQASSLTPLPIVY
ALLAQAHGSLGSKEKWKKNLRLEWFCWPPEMRPAEVYFQMHILARESEDRLEAASGIENC
QTPEKWVLRAIHTNPSCMRYWNVLDKLDQQLPIS
NT seq
3525 nt
NT seq
+upstream
nt +downstream
nt
atggaattggagcagcttgagaagtccgtggaagcgaacccaaacgatccttcacttcaa
ttccaacttggtttgtatctgtgggacaacggtggagacaactcggagaaagcggcggag
cattttgtgctgtcggcgaagttgaacccggacaatgctgctgcgttcaagtacttgggg
cattattactctcgtgtgacgcttgatcgcaaccgagctgctaagtgttaccagagagca
gtgttgctgaaccctaatgattctgagtctggagaggctttgtgtgatttgttggatgga
caagggaaagagatcttggaagctgcggtttgccgtgacgcttctgagaagtctcccaag
gctttctgggcgttttgcagattgggttacattcagcttcatcagaagaagtggtctgaa
gctgttcagagccttcaacatgctattagaggttatcctacagtgtctgacttgtgggaa
gctctgggccttgcttaccagcgacttggaatgtttactgctgctatcaaggcgtatggc
cgtgccattgaattagatgagaccaagatttttgcattagtggagagtgcaaacatcttt
ttgatgcttggttcatatagaaagggtgtggagctctttgagcaagcgctgaagatttca
cctcagaatatttctgtgctctatggtcttgcttctggattgcttagttggtcaaaggaa
tgcatagatttgggcgcatttggatgggctgcttctttgttggaggatgctcgtaaagct
gcggaagcaagcactgaactggccagcaacatgtcttctatatggaaattgcatggagat
attcagcttacttatgctagatgctttccatggtctggtggaactgagaactcagaattc
actttaaagacatttaatgattcaatcctttcttggagaagcatttgttactcagctgca
ttctcagccaaatcttcttaccagcgagctctacatttagccccctggcaagccaatctt
tatactgacatcgccatatcttctgatctcgtttcaagtttaagcgatgactctgagact
tctaattcttgttctatcaggaagctaccagaaaagatggctctgggagcgttatttctg
gaatgcgacaactcggagttctgggttgctttgggttgtatgtctgataacagtgctttg
aaactacatgctttgatccgggcgctgcatttggatgtatctttagccgttgcatgggct
tttatgggccagatcttcagggaatcagatgaaatgaaattggcaaagcaggcttttgat
tgtgctagaagcatagatcctacacttgcgctaccttgggctggctcagctgatacttat
gctagggagtcaacatcagatgaggcttttgaaagttgtttacgagctgctcagatatca
cctcttgcggagtaccaagttggtttggcatggcttgctctgctgcagggaaatatatcg
tctccgcagattttcgcttgcattgagcaggcggtgcagcgcacccctgattaccctgaa
tcccataacctccacgggctagtctgcgaggcaagacataactatcatactgccattgct
tcatacaggctagcactggctgcaatgagtgtttgccctgacaattcagtgaaatctcat
gctggaaaaatatctattaacttggtcagatcactcagcaaggcaggacgattcaaagaa
tctgtcaaggaatgcgcaaatttgaagtcaaaaggtttgcttgatgctggaggcttgcaa
atctatgccttctctctgtggaagatcggtgagaatgattcggctctctcagtggttcgg
gagctggctggtagcatttccaccatggaaaaaacatcaatacctttcccaatcagcttc
atctgtagtctgctttattgcatatctggaccggattctgctatcaccagcatccagaaa
atgccaaaggacttcttccagagttcgaaaatcagcttcatagtatctgccatccattct
cttgaccagagcgataggctccagtcgattgttgcaagcactcgtagctatatcacatca
caggaagaaatagttgctatgcactatttgatagcactcagcaaactgctgaaaactgga
gcaggagagttccttggatttgagaaggggattgcacacctcagaaaagctctgcatatg
tatcctcatagtaatttgttgaggaacctgctcggatatattttgttagctggtgaagga
acgaaagaggtgtgtgctgctagtagatgctgtatcataaacgtctccgagtgtggaaac
aaggaaggtctgaagtctgcgttggaggtccttggtggaggatcggttgcttgcaatgtg
attggcaatacagctccaaggttctcttttccaacatgccactgtcagagtctgaatgct
cctgttcttgttgtggaactacagaggttcttgcatcaagaaccttggaacagcgatgtg
agatacttgcttattctgaatctcatgcagaaggcccgtgaacagagattccctagacaa
ctttgcagtgctattgagagtttaatctccgtggcactctctgatgaggcgtgttcaaag
gaaggcgaatatcaaaagttccagcttctgctttgcgcttctgagatcagtttgcagaag
gggaatgtagcagagtccattgaccatgctcgaaaggcttcttccctttcccttccaagt
agctacctgtttcttgcacatttgcagctttgccgtgcctatgcagcaacagggagcacc
agaaacatgcaagaggaatacagagcgtgtttggagctcaagaccgactcaaatattggt
ttgatctgcctgaagctcatagaatctcagtttgatctggaggctgacactaacctctta
gagatgatgagcctacaagagagtccaagccaggagaagagttcatggaaagagtggatg
gctgtatacagtctagctcttggcttagtttcttccgggagaaaagacttttcctcagcg
gaggagtttcttgcgcaagcttgttcgttgggtaactcagagagctgtctacttctctgc
catggtgctgtctgcgtggagctggctagacagtctaatgactcgcatttcctctcacta
gctgtaacgagtctaagcaaagttcaagcgagttccctgactcctttgcctattgtgtat
gctttattggctcaagcacatggaagtcttggctctaaagagaaatggaagaagaatctt
cgccttgaatggttctgctggccaccagagatgagacctgcagaggtttacttccagatg
catatacttgcaagagaatcagaagacagactcgaagccgcttcagggattgaaaactgt
caaacccctgagaaatgggtgcttagggcgattcacactaacccttcttgtatgagatat
tggaacgtcttggataagcttgatcaacaacttcccattagctaa
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