Raphanus sativus (radish): 108817658
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Entry
108817658 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108817658
KO
K08518
syntaxin-binding protein 5
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108817658
Membrane trafficking [BR:
rsz04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
108817658
SNARE
VAMP, Ykt6, Sec22 (R)
Tomosyn
108817658
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
ANAPC4_WD40
Beta-prop_EML_2
WD40_Prp19
Synaptobrevin
WD40
Beta-prop_RIG_2nd
WDR55
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT140_1st
Beta-prop_WDR75_1st
Motif
Other DBs
NCBI-GeneID:
108817658
NCBI-ProteinID:
XP_018445906
UniProt:
A0A6J0KEF2
LinkDB
All DBs
Position
7:complement(5935831..5942961)
Genome browser
AA seq
1085 aa
AA seq
DB search
MFARKFLQKASAGGQKPSQAPPPPRGCLITEDLDPHLVSHYGIPSTASLLAFDPIQCLLA
VGTLDGRIKVIGGDNIEAILSSPKQLPFKNLEFIENQGFLVSISNDNEIQVWDLDLRKTA
SSLLWESNITAFSILHGTGYMYVGDEYGMVSVVKYNADEGKLVMLPYYVPTDALAEAAGL
SSPIDYPVVGLLSQPSSRGTRLLIAFSNGLLFIWDASEDRVVLVRGNKDLPMEGKTVNNS
LEASHDELSDLELDGKEISSLCWASADGSVLAVGYVDGDILFWDFSEGQKGKASNHAVKL
QLSSAEKRLPVIVMHWCLDVSRKNCGGKLFIYGGDIIGSDEVLTMLALDWSSGMGGLKCV
GRADLTLSGSFADMVLSPIASSRQSGVFLFLLTNPGQLQAYDDTSLASLMSQKENNSPVS
PLPYPMVVPTMDPRMTIAVFAALNVNDKLSLTLSEIVVAAKSRTPRTPSGESAQWPLTGG
VPSHLDDYKLERLYIVGYQDGSVRIWDATYPCLSLIYDLKPKANGIDITGVDASVTAISF
CSKTSCLAVGNESGMIRLFKLIGHKSEGTLEVVTNSEKKAHHLHQEDGPQWLSAYSFLSS
PVSTLGFVQSTRRLSVGFKCGRVAMLDVGAPSVMFVTNSLSDTGSPIESLCVKSSSAPTD
QNSLNSEALDDLILCAMTKDGQTILFDGNSGKMLPPSLKALKNSAAICMHIIENCYENSE
MPSENHEKKSHTINASESHSPGGEQNPVTETNFADHIFENSLFLMCSEDALRLYSLKSLS
QGSLESTLEVNLPRPCCWMGTLKKDGRECAVLLLYRTGHIEIRSFPNLEVVGESSLVSLL
SWNFKPNMEKTVCSDDFGHVFLVNGCEVVILSFLAHANGFRLPESLPMLHDKVLAAAADA
TFSHFPAHKKNHDGTPKFLSGIIKGFRSSNEQKVEQVQDFSHLGNIYSSPPYLKPSVTGG
DDDEKIIELNIDDIEIDEPITILPSTEKDKKEKKDKRTDKERLFDGASSDAQPKTRTVDE
IKAKYRKAGETSAIASQAKDKLLERGEKLERISQRTAELQDNAENFASMAHELAKQMEKR
KWWNI
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgttcgccaggaagtttcttcagaaagcctccgccggtggtcagaagccttctcaggct
cctcctcctccacggggatgtttgataacggaagacttggatccacatcttgtctcccac
tacgggataccttcgacggcttctcttcttgcttttgaccctattcaatgcctcttggct
gtgggaacactagatggaaggataaaagtgattggtggtgataacattgaggccattctt
tcatctcctaagcagttacctttcaaaaacttagagttcattgagaatcaaggctttctg
gtcagcatatcaaatgacaacgagattcaggtttgggacttggatcttaggaagacagca
tcaagcttactttgggagtcaaacattactgcattttcaatccttcatggcaccggttac
atgtatgttggtgatgagtatggtatggtgtctgttgtaaagtacaatgctgatgaagga
aaattagtgatgcttccttattatgttccaactgatgctttagctgaagcagcagggctt
tcatcacctattgactatcctgttgttggacttctttctcagccttcttcaaggggaact
agattgttgattgcattttcaaatggattactttttatctgggatgcatcagaagatcgt
gtggtgttagttcgagggaacaaagatctacctatggagggtaagacagtcaataattct
ctggaagcctcacacgatgagctttctgatcttgaactagatgggaaagagataagttct
ctgtgttgggcatcagctgatggttcagttcttgctgttggttatgtggatggagatata
ttattttgggacttttctgaggggcaaaagggaaaggcatctaatcatgctgttaagtta
cagttgtcttcagccgagaaaagacttcctgtcattgttatgcattggtgtttggatgtg
tctcgcaagaattgtggtggaaaactctttatctatggtggtgatatcattggttctgat
gaagtactgacgatgttggctcttgattggtcttctggtatgggaggtctgaaatgtgtt
ggccgtgcggacttgacccttagtggttcatttgctgacatggtattgtctccaattgct
agttcaaggcaaagtggggtgtttttgttcctgctgacaaatccaggacaattgcaagcg
tatgacgatacctctctggcctctctgatgtctcaaaaagagaataatagtcctgtttca
ccgctgccatatccgatggttgtaccgacgatggatccacggatgacaatagcagtgttt
gctgcattaaatgtgaacgacaagctgtcactgactttatccgagatagtagtagctgca
aaatctcgaacaccacgtactccatctggagaaagtgcacaatggcctctaacaggtggt
gttccaagccatcttgatgactacaagcttgagagactgtacatagtaggatatcaagat
gggtctgtgcgaatatgggatgcaacctatccatgcctatctctcatttacgacttgaag
ccaaaagcaaatggtattgacataactggagtagatgcatcagtaaccgcaatttccttc
tgttctaagacttcttgtttggctgttggtaacgaaagtggtatgattcgcctattcaag
ctgatcggccataaaagtgaaggcactttggaagttgttaccaacagtgaaaaaaaagct
caccatttacatcaagaagatggacctcaatggttgtctgcgtattccttcctgagttcc
ccagtttccaccctgggatttgtacagtctacaagaaggctttctgtgggatttaaatgt
ggcagggttgcaatgctcgacgttggtgcgccatcagtaatgttcgttacaaatagctta
tctgacaccggttccccgatcgagtcactctgtgtgaaatcctcgtcagctccaactgac
cagaactccttaaattccgaagctcttgatgatttaattttgtgtgcaatgaccaaggat
ggacagaccattcttttcgatggcaatagtgggaaaatgctccccccatccttaaaagct
ctgaagaactcagctgcgatttgtatgcacattatagagaactgctatgaaaactctgaa
atgcccagtgaaaatcatgagaaaaaatcgcatacgatcaatgcaagtgagagtcattca
ccaggtggtgaacagaatcctgtcacagaaacaaattttgctgatcatatatttgagaat
tcattatttctcatgtgttctgaggatgcactgcgattgtattctttaaagtcgttatct
cagggaagtcttgagagcactctggaggtaaatcttccaaggccgtgttgctggatggga
accctaaaaaaggatggaagggaatgtgcagtactcctgctttacagaacagggcatatt
gagataagatcgtttccgaatcttgaagttgtgggagagagctctttggtgtcacttctt
agttggaactttaagcctaacatggagaaaacagtatgttcggatgatttcggccatgtc
ttcctggtgaatggttgtgaagttgttatcctttcgtttctagcccatgcaaacggattc
agacttccagagtctttacctatgcttcatgacaaagtccttgcagctgctgctgacgct
acctttagccacttccctgcccataagaaaaaccatgatggcactccaaaattcctaagt
ggcattattaaaggcttcagatcaagcaacgaacagaaggtggagcaagtacaagatttc
tcccacctggggaacatctattctagtccaccatacctaaagccttctgttactggtggc
gatgatgatgagaagattatcgagctaaacatagatgacatcgagatagatgaacctata
accatcttgccttcaactgagaaagacaaaaaagaaaagaaagataagagaacagataag
gaaagactgttcgacggtgcttccagcgatgcacaacccaaaacgagaacagttgacgaa
ataaaggccaagtacagaaaagcaggggaaacctccgcaatagcttcacaagcaaaggac
aagcttcttgagcgtggagaaaaactcgagaggatcagccaacgtacagctgagctccaa
gacaatgctgagaactttgcatcaatggcacatgaactcgctaaacaaatggagaagcgt
aaatggtggaacatatga
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