Raphanus sativus (radish): 108817776
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Entry
108817776 CDS
T06014
Name
(RefSeq) transcription elongation factor SPT6 homolog
KO
K11292
transcription elongation factor SPT6
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108817776
03036 Chromosome and associated proteins [BR:
rsz03036
]
108817776
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
108817776
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
108817776
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SH2_2
HHH_7
YqgF
SPT6_acidic
Tex_central_region
Spt6_S1
HTH_44
HHH_9
HHH_3
Tex_N
Tex_YqgF
OB_PDCD11
Motif
Other DBs
NCBI-GeneID:
108817776
NCBI-ProteinID:
XP_018446066
UniProt:
A0A6J0KEY2
LinkDB
All DBs
Position
Unknown
AA seq
1590 aa
AA seq
DB search
MSRNALSDEEDDHELEDEDGEPVHGDPVDNADNDDDDDDEDEEEGDDEFENDGFIVDDEE
EEEDDEEEEEKKNSDEEKQKKKKKRRKMDEDLDEDDYLLLQDNDVKFQKRKFKRLKKAQR
EREGGQGGSSDDDFDRSGGARRSAEDKIKDNLFDDVDDLPDDVGDEEELPVEEDVVGSED
EMADFIVDEDGNGQPRRGNNKKRKYGQGSDMSAIHDANEIFGDVGELLSLRKKGLASSER
MERRLEDEFEPTILSEKYMTGKDDEIRQVDIPERMQISENSTGSPPVDELSIEEESNWIY
AQLTSLLKDPDGLHIFGGQGFSVNKDDIARFLELHHVQKLEIPFIAMYRKEQCRSLLDSS
DISDLDTEKKAETKWHKVLWMIQDLDKKWLLLRKRKTALHGYYTKRFEEESRRVYDENRL
NLNQYLFESVMKSLKVAETEREVDDVDSKFNLHFPAGEVGVDEGQYKRPKRKSQYSICSK
AGLWEVANKFGYSAEQLGLALSLEKLVDELEDAKETPEEMAMNFVCAMFENSQAVLKGAR
HMAAVEISCEPSVKKYVRGIYMENAVVSTSPTAEGNGIIDSFHQFAGVKWLREKPLSKFE
GAQWLLIQKAEEEKLLQVTFKLPENYMNKLVSDCYEHYLSVGVSKYAQLWNEQRKLILED
ALHAFILPSMEKEARYLLTSRAKSRLLSEYGQALWDKVSAGPYQKKEMDISSDEEAAPRV
MACCWGPGKPPNTFVMLDSSGEVLDVLYAGSLTLRSQNVNDQQRKKNDQDRVLKFMMDHQ
PHVVALGAVNLACTRLKDDIYEVIFQMVEEKPRDVGQMGELTIVYVDESLPRLYENSRIS
GEQLPQQSGIVKRAVALGRYLQNPLVMAATLCGPGREILSWKLHPLEGFLQVDEKYGMVE
QVMVDITNQVGIDVNMAASHEWLFSPLQFISGLGPRKAASLQRSLVRAGSIFVRKDLIMH
GLGKKVFVNAAGFLRIRRSGLAASSSQFIDLLDDTRIHPESYGLAQELAKDIYDQDVRGD
SNDDEDAIEMAIEHVRDRPGSLRKVVLEEYLASKNRENKKETYSNIMRELSCGFQDWRIP
FKDPTADEEFYMNSGETEDTIAEGRIVQATVRRLQGGRAICVLDSGLTGMLSKEDFADDG
RDIVELSDRLKEGEILTCKIKSIHKERYQVFLICKESEMRNNRHHQRNQNLDPYYHEDRN
SLLIEKEKARKEKELVKKHFKSRMIVHPRFQNITADQATEYLSDKEFGESIVRPSSRGLN
YLTLTLKIYDGVYAHKEIVEGGKESKDITSLQRIGKTLTIGEDTFEDLDEVMDRYVDPLV
SHLKTMLNYRKFRKGTKSEVDELLRVEKSENPARIVYCFGISHEHPGTFILSYIRSTNPH
HEYVGLYPKGFKFRKRMFESIDKLVAYFQRHIDDPLQETAPSIRSVAAMVPMRSPADRGS
QSEGGWKGNSDRSYAPRPGRGGEYRNGGGRGDGHPSGAPRPYGGRGRGRGRRDNNSERED
GNGDWGNNSTGAGDGGWGSSGGGWGSESGGKKSDSAGGWGSESGGGGGGGWGNESGGKKS
SDEDGGWGKESSGKKSGEDGGWGNSGGGGW
NT seq
4773 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaggaacgctctttccgacgaagaagacgatcacgagctcgaggatgaggatgga
gagccagttcatggagatcctgtcgataatgctgacaacgatgatgatgatgatgacgag
gatgaggaagagggtgatgatgaatttgagaacgatgggttcatagtggatgatgaagaa
gaggaggaggatgacgaagaagaagaagaaaagaaaaatagcgatgaggagaagcagaaa
aagaagaagaaacgaagaaaaatggacgaagatcttgatgaagatgactatctgcttctc
caagataacgatgtcaaatttcaaaagaggaagtttaagaggttgaagaaagctcaaagg
gaaagggaaggtggccaggggggatcatctgatgatgatttcgacaggagtggtggagct
agaagaagcgccgaggacaagatcaaagacaatctgtttgatgatgttgatgatttgcct
gatgatgtaggcgatgaggaggaattaccggttgaagaagatgttgttgggagcgaggat
gaaatggccgatttcatcgtagatgaagatgggaatggtcaacctaggaggggaaacaat
aagaaaaggaagtatgggcaaggatcagatatgagtgctatacatgacgctaacgagata
tttggtgatgtcggcgagctgttgtcacttcgtaaaaagggtttggcatctagtgaaagg
atggaacgaaggctcgaagatgagtttgagccaaccattctttctgaaaagtacatgact
gggaaagatgatgaaatccgccaagttgatattcccgagaggatgcagatatctgaaaac
agcactggaagccctcctgttgatgaacttagcattgaggaagagagcaattggatatat
gcccaacttacttcgctactgaaagatcctgatggacttcatatttttggagggcaaggt
ttctctgttaacaaggatgatattgcaagatttttggagcttcatcatgtgcagaaatta
gagataccatttatagctatgtaccgcaaggagcagtgccggagcttgttggactcttct
gatattagtgacctcgatacagagaagaaagctgagaccaaatggcacaaggtcctctgg
atgattcaggacttggacaagaagtggctccttcttcgaaaaaggaaaacggcgttgcat
ggttactatacaaaacgtttcgaagaagagtctaggagggtctatgatgaaaacaggctt
aacctgaatcagtatctttttgaatcagtcatgaaatctcttaaagtggcagaaacagag
agagaagttgatgatgtagattccaagttcaacttgcattttcctgccggtgaagttggt
gttgatgaagggcagtacaagaggccgaagcgaaaatcacagtatagcatctgcagcaaa
gcagggctctgggaggttgcaaacaaatttgggtatagcgcggagcagttgggacttgca
ttatccctagaaaaattggttgatgagctcgaggatgcaaaggaaacaccagaggagatg
gctatgaactttgtgtgcgcaatgtttgaaaattctcaagctgttcttaagggcgcacgg
catatggctgctgttgagataagttgcgagccatcagtcaaaaagtatgtccgtggcatt
tatatggagaatgcagtagtctcgacaagtccaacagcagaggggaatggaataatagac
tctttccatcagtttgctggggttaaatggttacgtgaaaagccattgagcaagtttgag
ggtgcgcagtggcttctcattcagaaggcagaagaggagaaacttcttcaagtaaccttc
aagctgcctgagaattacatgaataagctggttagcgactgctatgaacactatctaagt
gtcggtgttagtaagtatgcccaactctggaatgagcaaagaaaattgatactggaggat
gcacttcatgcttttattttgccatcaatggagaaagaagcaagatacttgctaactagc
agagcaaagagtaggttgctttcagagtatggacaggctttgtgggataaggtgtctgca
gggccatatcagaagaaagaaatggacattagctcagatgaggaagctgcaccgagggtc
atggcatgttgttggggccctggaaagccgccaaatacatttgtgatgctggattcatcg
ggagaggtgcttgatgtgctttatgctggatccctcacactgcgatctcaaaatgtcaac
gaccaacaacgtaaaaagaatgaccaggatcgtgttttaaagtttatgatggaccaccaa
ccgcatgttgtggctctaggagctgtcaatttggcttgtacccgtctgaaggatgatatt
tatgaggtcattttccagatggttgaagaaaaacctagagatgttgggcagatgggtgaa
ctaaccattgtttatgtagacgaatcacttcctaggctatatgaaaactctcgaatctcg
ggcgaacagctacctcaacagtctgggatcgtgaaacgtgcagttgctcttggacgctac
ctccagaatcctctagtaatggcagcgactttatgtggtccaggccgggaaatattgtct
tggaagcttcatccattggagggttttcttcaggttgacgagaagtacgggatggttgaa
caggttatggtcgacataacaaaccaggttggaatcgacgttaatatggcagctagccat
gagtggcttttttctcctttacagttcatctctggacttggacctaggaaagctgcatcc
ttgcagaggtcgcttgtaagagctggttcaatatttgtccgcaaggacctgatcatgcat
gggcttggtaaaaaagtttttgtaaatgcagccggtttcttgcgcatcaggaggagtggg
cttgctgctagcagcagtcaatttatcgatttattggatgataccagaatacatccggaa
tcgtatggtcttgcccaagaattggcgaaagatatttatgatcaggatgttagaggtgat
tcaaatgatgatgaggatgcgatagagatggcaatagagcatgtgagagatcggccaggc
tctctgagaaaagttgtccttgaggagtatcttgcaagcaagaaccgggagaacaagaag
gaaacttacagtaatatcatgagagagttaagctgtggattccaggattggaggatacct
tttaaagatccaactgcagatgaagagttttatatgaattcaggtgaaactgaagacacc
atagctgaaggcaggattgtccaggcaactgttcggagattgcagggtggaagagccata
tgtgtattagattctggactaactgggatgctttcgaaggaggatttcgcagatgatggg
agagatattgttgagctgtcagaccgactgaaagaaggcgaaatccttacatgcaagatc
aaatcgattcacaaggagaggtaccaagtgttccttatatgcaaggagagtgagatgaga
aacaataggcaccaccagcggaaccagaatctggatccgtattaccatgaggatagaaac
agtctcctgattgaaaaagagaaagctcggaaagaaaaggagcttgtgaagaagcatttc
aagtctcggatgattgtccatccacgttttcagaacatcactgctgatcaagcaaccgag
tatttatctgacaaagaatttggagagagcattgttcgtccaagctctcgaggactcaat
tacttgacattgaccctcaaaatttacgatggagtctatgcgcacaaggagatagttgaa
ggtggaaaagaaagcaaggacatcacgagcctacagcgtattgggaagacgctgacaatt
ggagaggacacctttgaggatttagatgaggtcatggatcggtatgttgaccctctggtc
tctcacctcaagacgatgcttaactacaggaagttccggaaggggacaaaatcagaagtt
gacgagcttctcagggtcgagaagagtgaaaaccctgcgaggatagtttactgttttggg
atctcacacgagcatcctggtacctttatactgtcctacataaggagcaccaatccgcat
cacgagtacgtcggtctgtaccccaaggggttcaagttcaggaagagaatgtttgaaagc
attgacaagcttgtggcctacttccagaggcatattgatgacccgctgcaggaaacagct
ccatcgatcaggtctgttgctgcaatggttcccatgagaagcccagcagaccgtggttcg
cagagtgaaggaggctggaaaggtaactcagatcgctcttatgcaccaagaccagggaga
ggcggtgagtacagaaacggtggtggacgtggtgatgggcatccaagtggagcgccaagg
ccttatggtggtcgaggtagaggcagaggaaggagggataataacagtgagagagaagat
ggaaatggagattggggcaataacagcaccggagctggggatggaggctggggaagtagt
ggtggtggttggggaagcgagtctggcggtaaaaagagtgacagtgcaggcggatggggt
agtgaatctggaggtggtggtggtgggggttggggaaatgagtctggcggtaaaaagagt
agcgatgaggatggtggttgggggaaggagtctagtggaaaaaagagcggtgaagacggc
ggttggggaaatagcggtggtggcggatggtga
DBGET
integrated database retrieval system
