KEGG   Raphanus sativus (radish): 108817799
Entry
108817799         CDS       T06014                                 
Name
(RefSeq) THO complex subunit 4B-like
  KO
K12881  THO complex subunit 4
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03013  Nucleocytoplasmic transport
rsz03015  mRNA surveillance pathway
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108817799
  09122 Translation
   03013 Nucleocytoplasmic transport
    108817799
   03015 mRNA surveillance pathway
    108817799
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108817799
   03041 Spliceosome [BR:rsz03041]
    108817799
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     108817799
    TREX complex
     108817799
Spliceosome [BR:rsz03041]
 Complex C
  Other components
   EJC/TREX
    108817799
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    108817799
SSDB
Motif
Pfam: RRM_1 FoP_duplication
Other DBs
NCBI-GeneID: 108817799
NCBI-ProteinID: XP_018446099
UniProt: A0A6J0KGE6
LinkDB
Position
7:complement(377981..379557)
AA seq 292 aa
MAGGLDMSLDDLIKSNRKPTGSRGRGNGGSSSGGRGFGGGSGPSRRFSNRVGNRTAPYSR
PLQQQQALDPMWQNDVFATDASVAAAFGNQSGGFGGVVGGSSIETGTKLYISNLDYGVSN
EDIKELFSEVGDLKRYGLHYDKSGRSKGTAEVVFSRRGDALAAVKRYNNVQLDGKLMKIE
IVGTNVSAPTPPVPLAPVQFPFAPNGILGNFNENYNGNFNGNFNGNFRGRGGFMGRPRGG
FGGGNFRGGRGGRGGRGGGGRGNGRGRDEKVSAEDLDAELDKYHKAAAMETS
NT seq 879 nt   +upstreamnt  +downstreamnt
atggcaggtggcctggatatgtcactcgacgatctaatcaaatctaatcgaaaaccaacg
ggatctcgcgggcgaggcaacggtggttctagtagcggtggtcgcggattcggcggtggc
tcgggtccgtctcgaagattttctaacagagtagggaacagaacggcgccgtattcaagg
ccgttacaacaacaacaagctctagatccgatgtggcaaaacgacgttttcgctactgac
gcgagtgtggcggcggcttttgggaatcagtctggaggctttggcggcgtcgtcggcggc
tcttcaattgagactggaacgaagctctacatctctaacttagattatggtgtctctaac
gaggatatcaaggagctcttctcagaggttggtgaccttaagcgttatgggcttcactat
gataagagtggaagatccaagggtactgctgaggttgttttttcacggcgtggtgatgcc
ttggctgctgtcaagcgttacaacaatgttcagttggatggaaagctgatgaaaattgag
atcgttggaacaaatgtttctgctccaacacctccagtgcctctcgctccagttcagttt
ccctttgcgccgaatgggatacttgggaactttaacgagaactacaatgggaactttaat
gggaacttcaatggaaacttcagaggaaggggtggctttatgggtcggcctcgtggtggt
tttggaggtggtaatttccgaggtggtagaggaggtaggggaggtagaggaggcggtggt
cgtggcaatggaagaggacgtgatgaaaaggtatctgcagaggatcttgatgctgaattg
gacaagtatcacaaggcggcagcaatggaaacgagttga

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