Raphanus sativus (radish): 108818061
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Entry
108818061 CDS
T06014
Name
(RefSeq) putative DEAD-box ATP-dependent RNA helicase 29
KO
K14808
ATP-dependent RNA helicase DDX54/DBP10 [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rsz03009
]
108818061
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108818061
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
Helicases
108818061
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DBP10CT
ResIII
ERCC3_RAD25_C
P-loop_SecA
Motif
Other DBs
NCBI-GeneID:
108818061
NCBI-ProteinID:
XP_018446418
UniProt:
A0A6J0KFS8
LinkDB
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Position
7:complement(13832357..13836401)
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AA seq
854 aa
AA seq
DB search
MVEGKGFLVSSVTELHRKEKQKKKGKSGGFESLNLGPNVYNAIKKKGYKVPTPIQRKTMP
LILSGVDVVAMARTGSGKTAAFLIPMLEKLKQHVPQGGVRALILSPTRDLAEQTLKFAKE
LGKFTDLRVTLLVGGDSMQDQFEELTKSPDVIIATPGRLMHLLEEVDDMSLRTVEYVVFD
EADSLFGMGFAEQLHQILAKLGENRQTLLFSATLPSALAEFAKAGLREPQLVRLDVENKI
SPDLKLSFLTLRPEEKYAALIYLVREHISSNEQTIIFVSTKHHVEFVNSLFKLENIVPSV
CYGDMDQDARKIHVSRFRARKTMLLIVTDIAARGIDIPLLDNVINWDFPPRPKIFVHRVG
RAARAGRTGSAISFVTPEDMPYLLDLHLFLSKPIRPAPTEDEVLKNVEEVMSRTSEAIES
GVTVYGRFPQKTIDLIFNRIQEMVDSSAELDSLERTSTKAFRLYTSTKPAPSKESIRRAK
ALPREGLHPMFKSIIEGGELEAMAFFQKIKDFRPKQTILEAEGDNARSRNVKGLQWVDVM
KRKREVHEEIINKRHDQQNQKTSSNNHLEMEVDEPITTSIEDKITGSKVSGKKRTAQQTF
KDEEFYISSIPVNHHSEAGLSVRGNEGFGSNRLDAAVLDLVADDGQGMKQQKTNYHWDKK
SKKYIKLNNGDRVTASGKIKTESGAKVRANKAGAIYKKWKDSTHKKAFSGEDGDGDDTPS
MSGRGGRRGKRWSASVPNAHVRSEIKDLEQVRKERQEKANKLSYLHSKRGGGRGGARGGR
GGGRGGGRDFDGGSGRDFAGRSSRGGRGGGSSRGGRGGGFGGGRGGGSGGGRGGGSSRGG
KRGGGGGGKRGRGR
NT seq
2565 nt
NT seq
+upstream
nt +downstream
nt
atggtcgaaggaaaggggttcctggtgagctcggtcacggagcttcaccgcaaagagaag
cagaagaagaaaggcaaatccggagggttcgagtctctaaacctcggtcccaatgtctac
aacgcaatcaagaagaaagggtacaaagttcccaccccgatccagcggaagacgatgcct
ttgatcctctccggcgtcgacgtcgtcgccatggccagaacgggttccggaaaaaccgct
gcttttctcatccctatgcttgagaagctcaaacagcacgtccctcagggcggcgttagg
gcgctcatcttgtcgcctactcgtgatttggctgagcagactcttaagttcgctaaggag
ctcggaaagtttacagatcttcgcgttaccttactcgtcggtggtgatagcatgcaagac
cagttcgaagagctaacaaaaagccccgacgtgatcatcgcaaccccggggagactcatg
catcttctcgaggaagtagacgacatgtcgctaagaacagtcgagtacgtcgtcttcgac
gaagcagacagtctcttcggcatgggtttcgccgagcagctccaccagatcctagccaag
ctaggcgaaaacagacaaaccctcctcttcagcgccacactaccaagcgccctcgcggag
ttcgcaaaggctggtctccgcgagcctcagctcgttagactagacgtagagaacaagatc
agccccgacttaaaactctcgttcctaacgttacgacccgaagagaagtacgccgcgttg
atatacttggtgagagagcatataagctctaacgaacagacgatcatattcgtttccacg
aaacatcacgtggagtttgtgaactcgctgtttaagctggagaacatcgtcccctctgtc
tgttacggtgacatggaccaagacgcacgcaagatccacgtttcaagattcagagcgagg
aagacaatgctgctgatcgtcacggatatcgctgctagaggtatcgacataccgttgctt
gacaacgttatcaactgggacttcccaccgagaccgaagatctttgtccatagagtggga
agagcagcgagagccggccgcacgggctcggcgatatcgtttgtaactcccgaggacatg
ccgtaccttctggaccttcatctcttcctgtccaaacccatcaggcccgcgccgacagag
gacgaggtgttgaagaacgtggaggaagtgatgagcaggaccagcgaggcgatcgagagt
ggtgtcaccgtctacggacgtttcccgcagaagacgattgatcttatatttaacaggata
caggagatggttgattcgtctgcggagttggattctctagagaggacgtcgacgaaggcg
tttcggttgtatacgagtacgaagcctgcgccgtcgaaagagtctattaggagagcaaag
gcgttgccgagagaagggttgcatcccatgttcaaaagcattattgaaggtggtgagttg
gaggctatggcgttttttcagaagattaaagacttcagacccaagcagaccatacttgaa
gcagaaggtgataatgccaggtctagaaatgtgaagggacttcaatgggttgatgtgatg
aagaggaaaagggaagtgcatgaggagatcattaataagagacatgatcagcagaatcag
aagacttcttccaataatcatttggaaatggaagttgatgaacccattaccacttctatt
gaggacaaaataactggaagcaaagtaagcggtaagaaaagaacggcacaacaaaccttc
aaggacgaagagttctatatcagctccataccagttaaccaccattcagaggcagggcta
tctgtgaggggtaacgaagggtttggatcaaacagattggacgctgctgttctagatcta
gttgcagatgatggccagggaatgaagcagcagaaaacaaattaccactgggacaagaaa
agtaagaagtacattaagttaaacaatggagatcgtgtaacagccagtggcaagataaag
acagagagtggagccaaggtgagggcaaacaaagcaggtgcaatatacaagaaatggaaa
gatagcactcacaagaaagcatttagcggagaggatggtgatggagacgacacaccaagc
atgtcaggtagaggtggccgaagagggaagagatggtcagcatcagtgcctaacgcgcat
gtgcgttcagagatcaaagatctggagcaggtgcgtaaggagaggcaggagaaagctaac
aaactgtcttatcttcatagcaagagaggtggtggcagaggcggggccaggggaggtcgc
ggtggaggaaggggaggcggcagggattttgatggtggaagcgggagggactttgccggt
agaagcagtagagggggaagaggtggcggaagcagtagaggaggaagaggtggtgggttt
ggcggcggaagaggtggtgggtctggcggtggacgtggtggtggtagtagcagaggtggt
aaaagaggaggtggtggtggaggtaaacgtgggagagggagatag
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