KEGG   Raphanus sativus (radish): 108818094
Entry
108818094         CDS       T06014                                 
Name
(RefSeq) sm-like protein LSM8
  KO
K12627  U6 snRNA-associated Sm-like protein LSm8
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03018  RNA degradation
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108818094
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108818094
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108818094
   03041 Spliceosome [BR:rsz03041]
    108818094
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108818094
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108818094
Spliceosome [BR:rsz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108818094
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 108818094
NCBI-ProteinID: XP_018446460
UniProt: A0A6J0KG09
LinkDB
Position
7:9907276..9909032
AA seq 98 aa
MATTTGLESLVDQIISVITNDGRNIVGLLKGFDQATNIILDESHERVFSTKEGVQQHVLG
LYIIRGDNIGVIGELDEELDASLDFSKLRAHPLKPVVH
NT seq 297 nt   +upstreamnt  +downstreamnt
atggcgacaactactggacttgagtctcttgtcgatcagatcatttcggtaatcaccaat
gatggacgcaacattgtgggacttctcaaaggttttgaccaggctactaatataatcctg
gatgaatctcatgaacgcgtcttctccaccaaggaaggagtacaacaacatgtgttgggt
ttgtacattatcagaggcgacaacataggtgttattggggagctggacgaggagcttgat
gctagtctggatttttccaaactgagggctcatcctttgaaacccgtcgtgcattga

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