Raphanus sativus (radish): 108818281
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Entry
108818281 CDS
T06014
Name
(RefSeq) probable pectate lyase 5
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108818281
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108818281
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108818281
NCBI-ProteinID:
XP_018446707
UniProt:
A0A6J0KFE3
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Position
2:complement(7097709..7099558)
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AA seq
405 aa
AA seq
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MTLLHLSLSLFSCLLLVAPTFIDSAHVSDPELVVQEVNQKINASRRNLGVLSCGTGNPID
DCWRCDRKWEKNRQRLADCAIGFGKHAIGGRDGKIYVVTDPSDKDAVNPKPGTLRHAVIQ
DEPLWIIFARDMVIKLKEELLMNSFKTIDGRGANVHIAGGACITVQYVTNIIIHGINIHD
CKKRGNAYVRDSPSHYGWRTASDGDAVSIFGGSHVWVDHCSLSNCADGLVDAIHGSTAIT
ISNNYLTHHNKVMLLGHSDSYTRDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYT
HWQMYAIGGSAAPTINSQGNRFLAPNDHVFKEVTKYEDAPQSKWKKWNWRSEGDLFLNGA
FFTPAGGRASSSYAKASSLSARPSSLVASVTGNAGALYCKKGSRC
NT seq
1218 nt
NT seq
+upstream
nt +downstream
nt
atgacacttcttcacttgtctctctccctattctcatgtctcctccttgtagctccgacc
ttcatcgactccgctcatgtttccgaccctgaactcgtagttcaagaagtaaaccagaag
attaatgcgtctaggagaaatcttggtgtcctctcatgtgggacaggaaaccctatcgat
gattgttggagatgcgacaggaaatgggagaagaaccgacaacgactagctgattgtgcc
attggatttggcaaacacgcaataggcggccgtgacggcaaaatctacgtggtgaccgat
ccgagcgacaaagacgcggttaaccctaaaccgggaaccctaagacacgcagtgatccaa
gacgagccgctatggatcatcttcgcacgtgacatggtcataaagctgaaagaagagctg
ctcatgaactcgttcaagaccatagacggtcgcggagctaacgtccacatcgccggaggc
gcgtgcatcactgtccaatacgtgaccaacatcatcatccacggcatcaacatccatgac
tgcaagaagagagggaatgcttacgtcagagattctccgtcgcattacgggtggaggacg
gcatctgacggtgacgccgtctcgatttttggtgggtcccacgtgtgggttgaccactgc
tcgttgtctaactgcgcggacggtctggtcgacgctattcatggatctacggctattacc
atatctaataactacttgacgcaccataacaaggtgatgcttttgggacacagtgattcg
tacacgagagacaagaacatgcaagtcaccattgcgtttaatcatttcggtgaagggctt
gttcagagaatgcccagatgtaggcatggatattttcatgtggtaaataacgattatacg
cattggcaaatgtatgcaattggtgggagtgcagctccaactattaacagtcaaggcaat
aggtttcttgctcccaatgaccatgtcttcaaagaggtgactaaatacgaagatgcacca
caaagcaaatggaagaagtggaactggagatccgaaggtgacttgttcctaaatggtgcg
ttttttacgcctgctggtggaagagcctcttcgagctacgccaaagcttcaagtttgtcg
gctagaccatcctcgttggtggcttctgtcacgggcaatgctggtgctctctactgtaag
aaaggatctcgatgttaa
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