Raphanus sativus (radish): 108818315
Help
Entry
108818315 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 18 isoform X1
KO
K14809
ATP-dependent RNA helicase DDX55/SPB4 [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rsz03009
]
108818315
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108818315
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
Helicases
108818315
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
Motif
Other DBs
NCBI-GeneID:
108818315
NCBI-ProteinID:
XP_018446774
UniProt:
A0A6J0KI97
LinkDB
All DBs
Position
2:25705199..25708438
Genome browser
AA seq
593 aa
AA seq
DB search
MGSSSNTNKALTETRFSDLEPPLSEDIIDALDRSGFEFCTPVQAATIPLLCRHKDVAVDA
ATGSGKTLAFVLPLVEILRRSTSYPPKPHQVMGVIISPTRELSTQIYNVALPFVSTLANV
NSVLLVGGREVKSDMNTIEEGGCNLLIGTPGRLSDIMERMEILDFRNLEILILDEADRLL
EMGFQKQVNSIISRLPKQRRTGLFSATQTEGVEELAKAGLRNPVRVEVRAESKSESSQHS
TNSKVPSGLHLEYLVCEADKKSSQLVDLLVENQKKKLIVYFMTCASVDYWGLVLSKIPAL
KSISLIPIHGDMKQNAREKALASFTEASSAVLLCTDVAARGLDIPGIDYVVQYDPPQDPN
MFNHRVGRTARLGKEGRAIVFLLPEEEDYVEFMCRRGVACQEKQCSEEASDVIPIIRSQA
MKDRAVLEKGLKAFVSFVRGYKEHLCSYIFRWKSLEIGKLAMGYGLLYLPSMSEVKQHRL
SSEGFTPVTDIKFEDIKFKDKFREKQRKQNMQARKEKREQEKKEKGKKNSKKAVAAAAAT
DSNKRKLTGKQRQTIQTAEDEEEMARDYRLLKKLKKGSIKEDDFAKLTGADDF
NT seq
1782 nt
NT seq
+upstream
nt +downstream
nt
atgggttcatcgtcgaacacaaacaaagcgttaacggagacccgtttctccgacctcgaa
cctccactctccgaagacatcatcgacgcccttgaccggtccggtttcgagttctgcact
ccggttcaggccgcgacgatccctctgctctgccgccacaaggacgtcgccgtcgacgcc
gccaccggttccggaaaaaccctagctttcgtcttgcccctcgtggagattctccgtcgt
tccacctcatatcctccgaagcctcaccaggttatgggggtgattatctctccaacgaga
gagctatcaacgcagatatataacgtggcactaccctttgtttccactttggcaaacgtg
aactctgtgctgcttgtcggaggccgagaggtgaagtccgacatgaacactatagaagaa
ggaggatgcaatctcttgattggcactcctggaaggctctctgacataatggaacgaatg
gagattctcgatttcagaaatcttgagattcttatcttagatgaagcggataggcttttg
gagatggggttccagaagcaggtgaacagcattatatctcgcttgccaaagcagcgtagg
actggtctcttttcagctacgcagacagaaggtgttgaagagctggccaaggctgggctt
aggaatcctgtgagagttgaagttcgtgctgagtccaagtcggaatcatcacagcactcg
acgaactctaaagtaccttctggtctgcaccttgagtatttggtatgcgaagcagataag
aagtcatcacaactagtggatctcctcgtcgagaatcaaaagaaaaagcttatagtatac
tttatgacctgtgcttctgttgattactggggactcgtgctttcgaaaatccctgccctg
aagtccatatctttaatccccatccatggggatatgaagcagaatgcaagagaaaaggca
ttagcttcgtttactgaggcatcaagcgctgtccttttgtgcactgatgtggctgcacgt
ggacttgatattccaggcattgattacgtagttcagtatgatcccccacaagacccaaat
atgttcaaccatagggttggcagaactgcaagattgggaaaagaaggaagggccatcgtt
tttctactgcctgaggaagaagactatgtagagtttatgtgcagaagaggggttgcttgt
caagagaaacaatgctctgaggaagcatctgatgtcatccctatcatacggtcacaagcc
atgaaggacagggcagtgttggagaagggattaaaggcatttgtttcctttgtccgtggt
tataaggagcatctctgctcttacattttcagatggaaaagcctagaaatcggaaagtta
gcaatgggatatggactcttgtatcttccttcaatgtctgaagtcaaacaacacagactt
tccagtgagggtttcactcccgttacagacatcaagtttgaggacatcaagttcaaggac
aaatttagggagaagcaaaggaagcagaacatgcaagcaaggaaagagaaacgggaacaa
gagaaaaaggagaaaggcaagaagaactctaaaaaggcggttgctgctgctgctgccaca
gattctaacaaaaggaagctaacaggaaaacagagacaaaccatccaaaccgctgaagat
gaagaagagatggctcgagactatcggttacttaagaaactcaagaaaggttctatcaaa
gaagatgattttgctaaacttactggagctgatgacttttaa
DBGET
integrated database retrieval system
