Raphanus sativus (radish): 108818352
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Entry
108818352 CDS
T06014
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108818352
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108818352
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108818352
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GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
F-box-like
LRR_4
DUF7885
F-box
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
108818352
NCBI-ProteinID:
XP_018446812
UniProt:
A0A6J0KFR6
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Position
7:15283097..15287022
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AA seq
598 aa
AA seq
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MQQKRVASSSFPEEVLEHVFSFLHLDKDRNSVSLVCKSWYEIERWCRRRVFIGNCYAVSP
AAVISRFPRARYVELKGKPHFADFNLVPEGWGGCVYPWIEAMSTAYTWLEEIRLKRMVVS
DECLELIAKSFKSFKVLVLSSCDGFSTDGLAAIAASCRNLRELDLRESDVEDVSGHWLSH
FPDTYTSLVSLNISCLAASDVCFSALERLVSRCPNLKSLKLNRAVPLEKLATLLKRAPQL
EELGTGVYTADVRSDLFSDLYVALSGCKKLKCLSGLWDAAPAYLPAVYSVCSRLTTLNLS
YATVQSYDLVKLISQCHKLQRLWVLDYIEDAGLDVLASTCKDLTELRVFPSEPFVMEPNV
ALTEKGLVSVSVGCPKLESVLYFCRQMTNDALVTIAMNRPNMTRFRLCIIEPKAPDHLTL
EPLDMGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGKYAKKMKMLSVAFAGDSDLGMHHVL
SGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPMLNVEV
IDERGPPDSRPESCPVERVFIYRTVAGPRFDMPGFVWNMDQQRSTMRFSRQIITTNGL
NT seq
1797 nt
NT seq
+upstream
nt +downstream
nt
atgcagcagaagcgagttgcgtcgtcgtcgtttcccgaagaagttctggagcacgtattc
tcctttctccacctcgacaaggacaggaactccgtctctctcgtctgcaagtcgtggtac
gagatcgagcggtggtgcaggaggagagtcttcatcgggaactgctacgccgtgagcccc
gccgcggtgataagccggttcccgagagcgagatacgtggagctgaaggggaaaccgcac
ttcgccgacttcaatttggtgccggaggggtggggagggtgcgtgtacccgtggatcgag
gcgatgtcgacggcgtacacgtggctggaggagattaggttgaagaggatggtggtgagc
gacgagtgcttggagcttatagccaagtcgtttaagagtttcaaagttctcgtgctttct
tcctgcgatggcttctccaccgatggcctcgctgcgatcgccgcctcttgcaggaatctg
agagagcttgatttgcgtgagagtgatgtggaagatgttagcggacactggcttagccat
ttccctgatacatacacatctctggtatcactcaacatctcttgcttagccgcctctgat
gtatgtttctctgctctggagaggctggtgagtaggtgtcccaatctcaagtctctcaag
cttaaccgagctgttcctctcgagaaattggctactttacttaaaagagcacctcagctg
gaggaattgggcaccggtgtgtacactgctgatgtgcgctcagatttgttctctgatttg
tatgtagctctctctggttgcaagaagttgaagtgcttatctggcctttgggatgctgct
cctgcttatcttccagctgtttattcggtttgcagtcggcttacgactttgaacctgagt
tatgcaacagtccagagctatgatcttgtcaagcttattagccaatgtcataaattgcag
cggctctgggtgctggactacatcgaagatgctggtcttgatgtgcttgcttcaacctgc
aaggaccttacagagctgagagtgtttccgtctgagccttttgtaatggagccaaacgtc
gcattgacggagaaagggcttgtctccgtctctgttggctgtccaaagctcgagtcggtt
ctttacttttgccgccaaatgaccaatgatgcgttggtaaccattgctatgaaccgtccc
aacatgactcgcttccgtttgtgcatcattgagccgaaagcccctgaccatctaacacta
gagccactggatatgggattcggagccatagttgagcactgcaaagatctacggcggctc
tccctatcagggctgttgacggacaaagtttttgaatacattgggaagtatgcaaagaag
atgaaaatgctctcagtggcgtttgcaggagacagtgacttagggatgcatcatgttttg
tcagggtgcgatagcctgaggaaactagagataagagactgcccttttggagacaaggcg
ctattggcaaatgcttcaaagctggagacaatgcgatctctttggatgtcttcttgttcc
gtgagttttggagcctgtaagttgttaggacagaaaatgccaatgctcaatgtggaagtc
atcgatgagcggggtccacctgactcgagacctgagagctgccctgttgagagagtgttc
atataccgaacagtagcgggtcctcggtttgacatgcctggcttcgtctggaacatggac
caacaacgctcaacaatgaggttttccaggcagatcatcactactaacgggttatga
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