Raphanus sativus (radish): 108818669
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Entry
108818669 CDS
T06014
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108818669
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108818669
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108818669
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108818669
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108818669
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
zf-CCCH
Torus
TFIIA
zf-CCCH_4
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
108818669
NCBI-ProteinID:
XP_018447088
UniProt:
A0A6J0KHN3
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Position
8:complement(6390605..6394684)
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AA seq
637 aa
AA seq
DB search
MEEADGLSFDFEGGLDSGPIQPTASVPVAPLENQSSAAVNLTPNYDHSSSAATAPGAGRG
RSFRQTVCRHWLRGLCMKGDACGFLHQYDKARMPICRFFRVHGECREQDCVYKHTNEDVK
ECNMYKLGFCPNGPDCRYRHAKLPGPPPPVEEVLQKIQQLTSYNYGANRFYQPRNAAAAP
QLGDNKPQVQVQTQEAGNLQQQQQQQQQPQQSQHQVSQTQTQNTAEQTSHPLPRGVNRYF
VVKSNNSENFELSVQQGVWATQRSNEAKLNEAFDSVDNVILIFSVNRTRHFQGCAKMTSR
IGGYIGGGNWKNEHGTQQYGGNFSVKWLKLCELSFHKTRNLRNPYNENLPVKISRDCQEL
EPSVGEELASLLYLEPDSKLMAISIAAEAKREEEKAKGVNPESRAENPDIVPFEDNEEEE
EEEDESEEEEDSMANGGPQGRGRGRGMMWPPQMPLGRGIRPMPGMGGFPLGVMPPPDAFP
YGPGGGYNGMPDPFGMGPRPFGPYGPRFGGDFRGPVPGMMFPGRPPQQFPHGGYGMMGGG
TGGRGPPLMGGMGNAPPRGGGGRPMYYPPATTTTSSARPGPTSSNRRTPERSDDRVAVDE
SHEMEQFEVGNSLRNEETESEDEDKAPRRSRHGEKRR
NT seq
1914 nt
NT seq
+upstream
nt +downstream
nt
atggaggaagccgatggactcagcttcgatttcgaaggcggactcgattccggtcccatc
cagcccacagcctccgtcccggtcgctccgctcgaaaaccaatcctccgccgccgtcaac
ctgacgccgaactacgatcactcctcctccgcggcgacggcgcccggagccgggagagga
cggagtttccgtcagaccgtatgcaggcactggctccgaggtctgtgtatgaaaggcgac
gcctgcgggttcctccaccagtacgataaggctcgtatgccgatctgcaggttttttcga
gttcacggcgagtgccgagagcaggattgcgtctataagcataccaatgaagatgtcaaa
gaatgcaatatgtacaagctagggttttgtcccaacggtcctgattgtcggtacaggcat
gcgaagctgcctggaccaccacctccagttgaggaagttcttcagaagatacagcagttg
acttcgtataattatggggctaatagattctatcagccgcgaaacgctgctgctgctccg
cagttgggagataataagcctcaggtgcaagttcagacgcaagaggcgggtaacttgcag
cagcagcagcagcagcaacaacaacctcagcaatcacaacatcaggtcagccagactcag
acacaaaacactgctgaacaaacgtctcatcctttgcctcgaggggtaaataggtatttt
gtagttaaaagtaacaattcagaaaatttcgagttatctgtccaacaaggagtatgggct
acacaaagaagcaatgaagcgaaacttaatgaagcttttgactctgtggataatgtgatc
ttaatattctctgtcaaccgaacacgtcatttccagggctgtgctaagatgacatccaga
attggtggttacattggtggaggaaactggaaaaatgaacatggaactcaacagtatggc
gggaacttttcagttaaatggttaaagttgtgcgaactgtccttccacaaaacccggaat
ttgaggaatccttacaacgagaacttacctgtgaagataagcagagactgtcaagagcta
gagccttccgttggtgaggagctggcttctttgctttatctggaaccagatagcaagctt
atggcaatatccatagctgcggaagccaaacgagaagaagagaaagctaagggagttaat
ccagagagcagagctgagaacccagacatcgtcccattcgaggacaacgaagaagaggaa
gaggaagaagatgaaagcgaggaggaagaagatagcatggcgaacggtggtcctcaaggc
agaggcagaggaagagggatgatgtggcctccccaaatgcctctaggacgtggaatcaga
ccaatgcctggaatgggaggtttccctctcggagtaatgccccctccggatgcttttccc
tatggacctggtggtggctataacggtatgccagatccattcggtatgggtccaagaccc
tttggaccgtatggaccaaggttcggtggtgatttcagaggacctgtaccagggatgatg
tttcccggtaggcctccgcaacagtttccacatggtggttatggtatgatgggaggaggc
actggggggcgtgggccaccgcttatgggaggaatgggaaacgctcctcctcgaggagga
ggaggcaggccaatgtattatccaccagctacaacaacaacatcatcagcacgtcctggc
cctacttcttccaacaggagaacacctgagagaagcgatgacagagtggcggtggatgaa
tctcatgagatggagcagtttgaggttggaaacagtttgagaaacgaagagacggaaagt
gaagacgaagacaaagctccaagacgatcaagacatggagaaaagcgtcggtga
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