KEGG   Raphanus sativus (radish): 108818721
Entry
108818721         CDS       T06014                                 
Name
(RefSeq) splicing factor SF3a60 homolog
  KO
K12827  splicing factor 3A subunit 3
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108818721
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    108818721
Spliceosome [BR:rsz03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108818721
 Complex B
    108818721
 Complex C
   U2 SnRNP specific factors
    108818721
SSDB
Motif
Pfam: SF3a60_Prp9_C SDE2_2C SF3A3 SF3a60_bindingd DUF951 Desulfoferrod_N
Other DBs
NCBI-GeneID: 108818721
NCBI-ProteinID: XP_018447149
UniProt: A0A6J0KJF8
LinkDB
Position
2:complement(25841882..25845140)
AA seq 508 aa
MSSTLLEQTRSNHEEIERLERLVVQDLQTEPSSSKDRLVQGHRVRNTIHSIMRTTEKLVE
TYEDKDGAREDEIAALGGHTATGINVYSAFYDRLKEIREYHKKYPSGPLVDASADYEALL
KVEPVISFSGEEGAGRYLDLHDLYNQYINSKFGEKVEYSVYLDVFSQPEKISRKLKFSRQ
YKKYMEALLEYLVNFFQRTEPLQDLDKMLSKVETDFEEQFADGKVVGWENHGQENEIPSQ
HSVIDLDYYTTAEELIEVGPEKLKEALGALGLKVGGTPQQRAERLFLTKDTPLEKLDRKH
FAKPPPNGKQNGDAKATQEGDSAKQIALTEAKVKKLCSLLDETIERTKQNVVKKQALTYE
EMEEEREGEEERAEVESDDEEGDFYNPLKLPMGWDGKPIPYWLYKLHGLGQKFECEICGN
SIYMGRRAFERHFKEFQHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQERQGVNKWRP
DLEEEYEDREGNIYNKKTYSDLQRQGLI
NT seq 1527 nt   +upstreamnt  +downstreamnt
atgtcgtcgactctcctcgagcaaacacgctccaatcacgaggagattgaaagactggag
cgactcgttgtgcaagatctacagaccgagccgtcgtcgagcaaggacagattggtacaa
ggccaccgtgtccgcaacaccatccactctatcatgcgcaccaccgagaagcttgttgag
acctatgaagataaggatggggctagggaagatgagattgcagctcttggtggccacact
gcaactgggatcaatgtttatagtgccttttatgatcgtctgaaagagatacgtgagtac
cataaaaagtacccttctggacctctcgttgatgccagtgctgactatgaagcacttctg
aaggtggaaccagttatttcgttcagtggagaggaaggcgctggtcggtacttggacttg
catgatctgtataaccagtacattaactctaaatttggggaaaaggttgaatattctgtt
taccttgatgtcttctctcaaccagagaaaatatcgcgtaaactgaagttttcaaggcag
tacaagaagtatatggaagctctgctagagtacttggtcaactttttccagcgaacggag
ccgttgcaagaccttgacaaaatgctttctaaggtggagactgattttgaagagcaattt
gcagatggaaaagttgtaggctgggagaaccatggccaggaaaacgaaattccgtctcag
cattctgtcatagatcttgattactacaccacagccgaggagttgatagaagtgggacct
gaaaagcttaaggaggcgctgggggcgctggggctgaaagttggtggtactccgcagcag
cgtgctgagagacttttcctcacaaaggatacgcctttggagaagctggataggaaacat
tttgccaaacctccgcccaatgggaaacaaaacggagacgccaaagcaacgcaggagggc
gacagtgctaaacagattgcactaacagaggccaaagtgaagaaactctgcagtttactt
gacgagacaatcgaaaggacaaaacaaaacgttgtaaagaagcaggccttgacgtatgaa
gagatggaggaagagcgcgagggggaggaagaacgtgcagaagtagaaagtgatgacgag
gaaggtgatttttacaatccactgaagctgccaatgggttgggacgggaagcctatacca
tactggctatacaagcttcatggccttggccagaaattcgaatgcgagatatgtggaaac
agtatctacatggggagaagggcttttgagagacattttaaagagtttcaacaccaacat
ggaatgcgttgcttagggatcccaaacacaaagaacttcaacgaaatcacttcaattgag
gaagcgaaagagttgtggaagaagatccaggagaggcaaggagttaacaaatggaggcca
gatcttgaagaagagtatgaagatcgtgaaggtaacatctacaacaagaagacttactct
gatctccaacgtcaaggtctcatctga

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