Raphanus sativus (radish): 108818844
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Entry
108818844 CDS
T06014
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 20
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108818844
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108818844
03009 Ribosome biogenesis [BR:
rsz03009
]
108818844
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108818844
Spliceosome [BR:
rsz03041
]
Complex A
U1 snRNP components
U1 related factors
108818844
Complex B
108818844
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
Helicases
108818844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
108818844
NCBI-ProteinID:
XP_018447291
UniProt:
A0A6J0KIE8
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All DBs
Position
8:complement(25308041..25311332)
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AA seq
498 aa
AA seq
DB search
MSRYDSRTGDSTSYRDRRSDSGFGGASAYGSSASSKRETSVESPKKQPDLDGLTPFEKNF
YVESPSVAAMTEAQVEEYRRMREITVEGRDIPKPVKSFRDVGFPDYVLEEVKKAGFTEPT
PIQSQGWPMALKGRDLIGIAETGSGKTLSYLLPAIVHVNAQPILAPGDGPIVLVLAPTRE
LAVQIQQEASKFGSSSKIKSTCIYGGVPKGPQVRDLQKGVEIVIATPGRLIDMMESNNTN
LRRVTYLVLDEADRMLDMGFDPQIRKIVSHIRPDRQTLYWSATWPKEVEQLSKKFLYNPY
KVIIGSSDLKANRAIRQIVDVISESQKYNKLVKLLEDIMDGSRILVFLDTKKGCDQITRQ
LRMDGWPALSIHGDKSQAERDWVLSEFRSGKSPIMTATDVAARGLDVKDVKYVINYDFPG
SLEDYVHRIGRTGRAGAKGTAYSFFTAANARFAKELISILEEAGQKVSHELASMGRSTAP
PPPGLGGFRDRGSRRAWS
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atgagtcgttacgatagccggaccggtgactccacctcctaccgtgaccgtcgaagtgac
tcggggtttggtggagcttcagcgtacggaagctcagctagtagtaaaagggagactagt
gttgagtctccaaagaagcagccagatttggatggtttgactcctttcgagaagaacttc
tatgtcgagtcaccctctgttgcagctatgacggaggctcaagtggaggagtatcgaagg
atgagggagatcactgttgaaggtcgtgatattcctaaacctgtcaaaagctttcgtgat
gttggctttcctgattatgttttggaagaggttaagaaggctggttttactgagcctacc
cccatacaatctcaggggtggccaatggcgttgaagggacgtgatctcattggcattgct
gaaactggctctgggaagactctttcttacttgctacctgccatagtccatgtgaatgct
caaccaattttagctcctggggatggtccaatcgtcttggttcttgctccgacacgtgaa
ctggctgtgcagatacagcaagaagcgtctaagttcggttcatcgtcaaaaatcaagagc
acttgcatttacggtggtgtcccaaaagggcctcaagtgcgtgatctccagaaaggtgtg
gaaattgttatagctactcctgggaggttaatagacatgatggagtctaacaacacaaac
ctacggagggttacttatcttgttttggatgaggctgatcgaatgctggatatggggttt
gaccctcagatcagaaaaattgtttcacatattcggccagatcgtcaaactttgtactgg
agtgctacttggcctaaggaggtggaacagctctctaagaagtttctttataacccatac
aaagttataataggatcttctgatttaaaagctaaccgtgcaatccgtcagattgttgat
gtcatttccgaaagccaaaagtataacaagttggtgaagttgcttgaagacataatggat
ggaagcagaattcttgtcttccttgacaccaaaaagggctgtgaccaaatcactcggcag
cttcgcatggatggttggcctgctttgtcaatacatggtgataaaagtcaagccgagaga
gattgggtactctcggagtttagatcagggaaaagtcctataatgactgctacagacgtc
gcagctcgtggactagatgttaaggatgtgaagtatgtgataaactatgacttccctgga
tcactggaggattatgttcacaggattggacgaactggtagagctggggcgaaaggaaca
gcttacagtttcttcacagctgcaaatgcgaggttcgccaaagagcttatcagcatacta
gaagaagctggacagaaagtgagccacgaattagcatcaatgggtcgcagcacagctcct
cctcctccagggcttggaggatttagggaccgtggaagcagaagagcttggagttga
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