Raphanus sativus (radish): 108818996
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Entry
108818996 CDS
T06014
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH4
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108818996
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108818996
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108818996
Spliceosome [BR:
rsz03041
]
Complex C
Other components
Step II factors
108818996
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
HA2_N
HA2_C
AAA_22
DEAD
AAA_19
ABC_tran
AAA_16
Helicase_RecD
ATPase_2
nSTAND3
cobW
SLFN-g3_helicase
AAA_30
NB-ARC
NPHP3_N
AAA_23
AAA_33
AAA_29
AAA_14
AAA_18
T2SSE
FtsK_SpoIIIE
nSTAND1
TsaE
Motif
Other DBs
NCBI-GeneID:
108818996
NCBI-ProteinID:
XP_018447479
UniProt:
A0A6J0KKE1
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All DBs
Position
8:complement(5430318..5434994)
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AA seq
705 aa
AA seq
DB search
MANLPILQFEEKIVETVESNPVVVIIGETGSGKSTQLSQILRRHGYTNSGVIAVTQPRRV
AAVSVARRVAQELDVTLGEDVGYAIRFEDRTSSKTRIKYLTDGVLLRESLSNPMLDDYSV
IILDEAHERSLNTDILLGLMKRLVRIRSSNFKVLITSATLDGEKVSRFFSGCPVLNVPGK
LYPVEILYSKERPGSYIESSLKVAIDIHVREPEGDILIFMTGQDDIEKLVSKLEEKVRSL
AEGSCMDAIIYPLHGSLPPEMQVRVFSPPPPNCRRFIVATNIAETSLTVDGVVYVIDSGY
VKQRQYNPSSGMYSLDVTQISKVQANQRAGRAGRTRPGKCYRLYPLAVYRDDLLDATIPE
IQRTSLAGSVLYLKSLDLPDIDILKFDFLDAPSSESLEDALKQLYLIDAIDENGAITSIG
RTMSELPLEPSLSRTLIEANESGCLSQALTVVAMLSAETTLLPVRGKPSERKRKRDDEES
NLPDGSGFGDHIQLLQIFECWDSNNYDIRWCKDNGLQVRGMVFVRDVRRQLCQIMQKISK
DRLEVGARGRKGSSREEYRKLRKALCVGNANQVAERMLRHNGFRTLTFKPQLVQVHPASV
LSTDKDGMLPNYVVYHELISTTRPFMRNVCSIEMSWVDPIKRKIEKLDVGKLSGGADNSF
KEPEEKKSTELSTSSNNAETPTVSENVESRIQAARERFLARKGQK
NT seq
2118 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatctcccgatcctccaattcgaagagaagatcgtcgaaacagtggagagcaac
ccagtggtggtcatcatcggagaaaccggttccggaaagagcactcagctctcccagatc
ctccgtcgtcacggctacacaaactccggcgtcatcgccgtcactcagccccgtcgtgtc
gccgccgtttccgtcgccaggcgagtagcgcaggagcttgatgtaaccctaggagaagac
gttggttacgcgatacgtttcgaagacagaacgtcgagcaaaacgcgcatcaagtacctt
acagatggagtcttactccgtgagagcctctctaacccaatgcttgatgattactctgtc
atcatattagatgaagctcacgagaggagtttaaacacggatattctgttggggctaatg
aaacgtctggttagaatccgttcgtcgaacttcaaagtccttataacctctgcaacgctt
gacggcgaaaaggtttctcgattcttttcggggtgccctgtgctgaatgtacctgggaag
ttataccctgtggagatattgtacagcaaagagcgtcctggcagttatattgagtcgtct
ctcaaagtagccattgatatacatgttcgtgagccagaaggtgatatcttaatctttatg
acggggcaggatgatatagaaaagttagtatcaaagctggaggaaaaagtaagaagctta
gcagaaggatcctgtatggatgctattatttatcctcttcatggatctctgccacctgag
atgcaggttcgtgtatttagtccacctcctccaaactgccggaggtttattgttgctaca
aatattgctgaaacttccctcaccgtggatggggttgtgtatgttattgattcggggtat
gtgaagcaaagacaatataacccatcaagtggaatgtattctcttgatgttactcaaatt
agcaaagtgcaagctaaccaacgtgctggacgtgctggtagaacgagacctgggaaatgt
taccgattataccccttggcagtctaccgggatgatctccttgatgcaacgattcctgaa
atacaacgaacttcccttgctggaagtgttctttacttgaaatcattggatcttcctgat
attgacattctcaagttcgattttcttgacgctccatcatcggagtcattagaagatgct
ttgaagcagttgtatctcattgatgcaattgatgagaatggagcaataacaagtattgga
aggacgatgtctgagcttccactagagccatcattgtcaaggacattgatagaagcaaat
gaaagtggttgcttatctcaagctttaacagtcgttgctatgttatcagcagagactact
ctacttcctgttaggggtaaacccagtgaaaggaagaggaagcgtgatgatgaagaatct
aatcttcctgatggatccggatttggtgaccacattcaactactacagatttttgaatgt
tgggacagtaataattatgatattcgatggtgcaaagacaatggcctgcaggtgcgaggg
atggtgtttgtcagagatgttagacgacaattatgtcagattatgcagaaaatatccaaa
gatcgattggaagttggggcacgaggaaggaagggttcaagccgagaggagtacaggaag
ttgaggaaagctctatgtgtgggtaatgcaaaccaagttgctgagagaatgcttcgtcat
aatggattccgaacgcttaccttcaagccccagcttgtccaggtgcatccagcatctgtg
ctgagtaccgacaaggatggtatgctaccaaattatgtagtgtaccacgaactgatatcc
accacacgaccgttcatgcgcaatgtttgttcgatcgaaatgtcatgggtggatcccatc
aaaagaaagattgagaaattagatgttggaaaactgagtggtggagctgataactctttc
aaggaacctgaagagaagaagagcacggagttgtctacgagcagcaacaatgcagaaaca
cctacagtttctgaaaatgtcgagagtagaatccaagcagctagagaacggtttcttgct
cgtaaaggacagaaataa
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