Raphanus sativus (radish): 108819082
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Entry
108819082 CDS
T06014
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X2
KO
K10683
BRCA1-associated RING domain protein 1
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108819082
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108819082
04121 Ubiquitin system [BR:
rsz04121
]
108819082
03036 Chromosome and associated proteins [BR:
rsz03036
]
108819082
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108819082
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108819082
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108819082
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108819082
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
108819082
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-C3HC4_2
zf-HC5HC2H
zf-RING_UBOX
zf-RING_2
RTT107_BRCT_5
zf-C3HC4
zf-C3HC4_4
zf-HC5HC2H_2
zf-C3HC4_3
zf-RING_6
zf-RING_5
PTCB-BRCT
zf-RING_10
PHD_NSD
Motif
Other DBs
NCBI-GeneID:
108819082
NCBI-ProteinID:
XP_018447573
UniProt:
A0A6J0KIZ6
LinkDB
All DBs
Position
8:12028995..12033375
Genome browser
AA seq
929 aa
AA seq
DB search
MGDAASHLEKMGRELKCPICLSLFNSAVSLTCNHVFCNACIVKSMKVDATCPVCKIPFHR
REIRGAPHMDSLVSIYKNMEVASGAHLFVSQTKQSSPPEKEQHMGDASTEKTNDKKRQGS
SKGRTRTSKKRGSKKTKETDVDSSGPIVMKPSSQTNKRVQLSQSHSSHSLPKSTESLESS
EKLNKDYTDNTVIRLNENPSLNKEENLAPLFWLRDEGDGESLSQPTESDQLLDVTPVDVP
SFSDLKDSDHENPSKAVEKEKPNPGDMFDSEMFEWTQRPCSPEILPSPVKAKTQGRGEID
LPQSKLSKDASSNKKRREGSARNKVAKVRVGVSKDYMEASAGEAIGEKQETGETSGKSTR
KDGKLDEKVKAKRTTRNKGQTSRVQSGVKESVEAEGKQGTKRKRSSVKVSADHPVAGSNQ
FSLATENVGKGDQEPEKQITAEKPSVKKRRKSQIGDLSGKIEKKTSEKRSKPDSCATPSR
VTQPCGKKILSDELNQVGDRQDSTNKEKPNVDKGNHTVQDSEKHSTMNKPSLGGGSVLLR
PCDGLPTNKLTCAFCQSSDETEASGKMAHYHKGEPVSADFSGGSNVIHVHKNCTEWAPNV
YFNRRTAVNLDVELTRSRRITCSCCGLKGAALGCYNESCKNSFHVTCAKLIPECRWDDKN
FVMLCPMDASSKLPCEETSPKGRKRQLTPKGPLQSQPNQVPEKSNITELQSKPFHGLPKK
MVLCCSGLTDEEKSVISEFAELSGVTISRKWEPRVTHVIASTNENGSCKRTLKFMMGILE
GKWILSIDWIKACMKNRKYVREEPYEISIDVHGTRQGPYIGRQRALNKEPKLFNGLKFYM
MGDFEVAYKGYLQDMIVAAGGTILRRRPISSDDNEASTIVVFNVEPSKKKTLTERRSDAD
ALARSVNARAASSSWVLDSIAGCQILDLI
NT seq
2790 nt
NT seq
+upstream
nt +downstream
nt
atgggagacgccgcaagtcacctggagaagatgggaagagaactcaagtgccctatttgc
ttgagtctatttaactctgcagtttcccttacctgcaaccatgtcttctgcaatgcatgt
atagtgaaatccatgaaagttgatgctacttgtcctgtctgtaaaatccctttccatcgt
agagagattcgaggtgctcctcatatggatagtttggtgagcatttacaagaacatggaa
gttgcttctggtgctcacttgtttgttagccagactaaacaatcatcaccaccagaaaaa
gaacagcacatgggagatgcttctactgaaaagactaatgataagaaacgtcagggatct
agtaaaggcagaaccagaacatccaagaagagagggtctaaaaagaccaaggaaacagat
gtagattcctctgggcctattgttatgaaaccttcatctcaaaccaataaaagggtgcag
ctgtcgcagagtcattcttctcatagtttaccgaaatctacagaatctcttgaatcatct
gaaaagctcaacaaggattacactgacaacactgtgattcgtttgaatgagaacccaagt
ttgaacaaagaagagaatctagcacctttgttttggttaagagatgaaggggatggagag
agcttaagccagccaacagaaagtgatcagcttttagacgtaacacctgttgatgttcct
tctttcagtgatttgaaggactccgatcatgagaacccatccaaagcagttgagaaagaa
aagccaaatccaggagacatgtttgacagtgaaatgtttgaatggactcaaaggccttgt
tctccagagattctacctagtcctgtgaaggccaagacacaaggtagaggtgaaattgat
cttcctcaaagcaaactatctaaagatgcatcatcaaataaaaaacgcagagaaggaagt
gcaagaaataaagttgctaaagtacgtgttggggtttccaaggactacatggaagcgtct
gcaggagaagctattggtgagaaacaagagactggtgagacttctggcaaatctaccagg
aaagatggaaagcttgatgaaaaagtgaaagctaaacggactacaagaaacaagggccag
acttcaagagttcagtctggtgtcaaagaatctgtggaagcagagggaaagcaggggaca
aagaggaaaagatctagcgttaaagtgtctgcagatcacccggttgctggatctaatcaa
ttctcacttgcaacagagaacgttggaaagggggatcaggaacctgaaaaacaaattact
gcagagaaaccctctgttaaaaagagaagaaaatctcaaataggtgatctgtctgggaaa
attgaaaagaagacttcagaaaagagatcaaaacctgattcatgtgcaaccccaagcaga
gttacacaaccgtgtggcaagaaaatcttaagtgatgagttgaatcaagtgggtgataga
caagattcaactaacaaagagaaacccaatgtggataaaggcaatcataccgtacaagat
tcagagaaacactcaacgatgaacaagccctcacttggaggaggtagtgtacttctgcga
ccatgtgatggactgccaacaaataaattgacttgtgcattctgccagtcttcagatgaa
acagaggcttcaggaaaaatggctcactaccacaaaggtgaacctgtctctgcagatttt
agtggagggtctaacgtcatacatgttcataaaaattgtactgaatgggctccaaatgta
tacttcaacagacgtaccgcagtcaaccttgatgtggagctgacaagaagccggagaata
acttgcagttgctgtgggcttaaaggggcagcacttggttgttacaatgagagttgcaag
aatagttttcatgtaacgtgtgcaaaactgataccggaatgcagatgggacgataaaaac
tttgtaatgctttgccctatggatgcatcctctaagttgccctgtgaagagactagtcca
aaaggaagaaaacgccagcttactcctaaaggaccactgcagtctcagcctaatcaagta
cctgaaaaatccaacatcactgagctccagagcaagccttttcacggattacccaagaaa
atggttctgtgctgttcaggacttacagatgaagagaagagtgtgatatctgaatttgct
gaactgtctggagttacaatctcgagaaaatgggagccaagagttacacatgtcattgca
tcaaccaacgaaaatggatcctgcaaaaggacgctcaagttcatgatggggatcctggag
gggaaatggattctgagcattgactggatcaaggcctgtatgaaaaacagaaaatatgta
agggaggagccatatgagatttccattgatgttcatggaacacgacaaggaccttatatt
ggaagacaaagagctttaaacaaggaaccaaaactgtttaacggactaaagttttacatg
atgggagatttcgaggttgcttacaaagggtatcttcaagatatgattgtagcagcagga
ggaacgatcttgcgcaggcgacccatttctagtgatgataacgaagcttccacgattgta
gtatttaatgttgagccaagcaagaagaaaactctgacagaaagaagatccgatgctgat
gcgctggctagatctgttaatgcaagagctgcaagcagttcatgggtgttggattctatc
gcaggttgccaaattctagacttgatataa
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