Raphanus sativus (radish): 108819090
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Entry
108819090 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: protein BREAST CANCER SUSCEPTIBILITY 2 homolog B
KO
K08775
breast cancer 2 susceptibility protein
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03440
Homologous recombination
rsz03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108819090
03460 Fanconi anemia pathway
108819090
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108819090
03036 Chromosome and associated proteins [BR:
rsz03036
]
108819090
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108819090
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108819090
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
108819090
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
108819090
FA (Fanconi anemia) pathway
Downstream FA components
108819090
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
Orbi_NS1
DUF4503
Motif
Other DBs
NCBI-GeneID:
108819090
NCBI-ProteinID:
XP_056847600
UniProt:
A0A9W3C7U2
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All DBs
Position
8:20016518..20021810
Genome browser
AA seq
1093 aa
AA seq
DB search
MSTWQLLPDSSGDGFRWEAAGRILQSGKSENSPPTTAPPLPSMADLLLRGCSKLIEPEVS
KPTMFTTALGKSVALKESSLSKAKSILADSGACSLLLLLRCLLRRTDGLTIKXMTFKIVT
ADMLLTSFCLCCVEDNALSRETEFGVPNSFFQTASNKKVNVSSAGMARAKALLGLEEEDD
YSGFKHVNRLRTPETFGATSVQHRSVAPGGHYEEGQRSEILSSSPKVPQTKFQTAGGRSL
SVSVEALNRARSLLGDPELGPFFDDSATGDHFVTPQKDRWIGGDIPHEAKASNKHTSNSF
ISPLQSSSKQFRSVKLEDVASGVNLIKKFDAAVDEAHGISNNRPLASDMAVNNKTGNGFI
SRATEFGRQAHQPLVDITNRSDIAYANNRQESSQKKRLGKTVSVPPFKRPRTSSFKTPLM
KNDQHASIGLSVVSCDTQYSKKVLSTRPEERSLRIYIKDYFGMPPTATTKMDVPEHVRRI
KSSNADKYVFGDVSSSSVVGAETFRQMLAESGASLQRASREWVTNHYRWIVWKLACYETY
YPAKCRGNFLTITNVLQELRYRYEREVNHGHCSAIKRILSGDAPASSMMVLCISAINPKT
RETHGSDSGSNVKIELTDGWYSINAALDVMLKKQLNAGKLFIGQKLRIHGAGLSGWTTPT
SPLEAVISNTICLLLNINGTYRAHWADRLGFCKEAGVPLALNCIKCNGGPVPKTLAGITR
IYPILYKEKLGEKKSVVRSERMEWRMIELHNQRRSDLIEGLICEYQGGINGGYSQNDTDS
KEGAKLFKLLESAAEPDFLMADMSMEELNCFNRYKEKFEAAMEKKMEKSIAKAMEDAGLG
ERDVTPFIRIRLVGLTRLSNDGHRNPKEAILTIWNPTETQRTELTEGKIYAMKGLVPMNI
DSETLYLHARGSSSRLQPLSPKASESFQPFFNPRKSISLLDLGEIPLGSEFDMAAYVVYV
GNAYTDVDQKKQWVFVTDGSLQYSDSGNSANSLLAISFSTSSMDDLHSPLISHNLVGSVV
GFCNLIKRAKDVENDMWVCEAMENSDYFLNADAACPSHLKTSSDHIQIWANLTFSKSIIH
QLRQRALFIVGAC
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atgtcgacgtggcagctattacctgattcaagcggcgacggtttccggtgggaagccgct
ggccggattcttcagtctggcaaatccgagaattctccgccaaccacagctcctcctctt
ccttccatggcggatctcttgctccgaggatgctcgaaacttatagaaccagaggtatcg
aagcccacaatgttcacgactgctctgggcaaatctgtagctcttaaagaatcttcgctt
tccaaagccaaatcgattttagcagattcaggtgcatgttctttgttattacttctacgc
tgtttattgagaagaacggatggacttactataaagtgaatgacttttaagattgtaaca
gctgatatgttacttacctctttctgtttgtgttgtgtagaggataatgctctctccagg
gagactgagtttggtgttcccaactcttttttccagactgcttctaacaagaaggttaat
gtgtcttctgctggtatggcaagagccaaggcattgttaggactagaagaagaagatgat
tatagtggattcaaacacgtgaaccgtttaagaactcctgagacgtttggtgctacatcg
gttcagcatcgttctgtagctccaggaggacattatgaggagggtcaaagatctgaaatt
ttgagttcatctccaaaggttcctcaaacaaagtttcaaactgctggtgggaggtcattg
tcagtgtcagtcgaagccttgaatcgtgcaagaagccttcttggagaccctgagttaggg
cctttctttgacgattcagcaacaggtgatcactttgttacaccacagaaagatagatgg
ataggtggtgatattcctcatgaagcaaaggcgagcaacaagcatacatctaatagtttt
atatctcctctccaatcatcttcaaagcaatttagatcagtcaaactggaggacgtagct
tcaggggttaatttgatcaagaaatttgatgcggctgttgatgaggcacatgggatatca
aataacaggcctttagcatctgatatggcagttaataataaaacgggaaacggtttcatt
tcaagagctacggaattcggaagacaagctcaccagccacttgtggatatcacaaatcgc
agtgatatagcttatgcaaacaatagacaagaaagcagccaaaagaaaagactgggaaag
acagtctctgttcctccttttaaaaggccgagaacctcctcctttaaaacccctctaatg
aaaaatgaccagcatgcttcaattggtttgtctgtcgtatcttgtgatacacaatattcc
aaaaaggtgctttccacaagacctgaagaaaggtctctaagaatatatatcaaggattat
tttggaatgcctccaacagctacgaccaagatggatgtgccagaacatgtcagaagaatc
aaatcaagtaatgcagataaatatgtgtttggtgatgtgtcttcctcaagcgtggtggga
gctgaaacttttcgtcaaatgttggcagagtctggtgcttccttacaacgtgcatctaga
gagtgggtcaccaatcactacaggtggatagtctggaaactcgcatgctacgagacatac
tacccagccaaatgcagaggaaactttctgacgatcaccaatgttctccaggaactaaga
tatagatatgagagagaggtcaatcatggtcactgctctgcaataaagaggattctgagt
ggtgatgctccagcttcttcaatgatggtgctctgcatatctgctattaatccaaagact
cgagaaacacatggttctgatagtggcagcaatgtgaaaatagaactcactgatggatgg
tattcgataaatgctgctctggatgtcatgctgaaaaaacagttgaatgctggaaaattg
tttattgggcaaaagcttcggatacatggggcaggactttctggctggactaccccaaca
tcacctcttgaggcagtgatttcgaatacaatctgtttgttgttgaatattaatgggaca
tacagagctcactgggcggaccgactaggattctgtaaagaagctggtgtccctctggct
ctcaactgtatcaagtgcaatgggggccctgtgcctaaaacgttagctggaattacacga
atataccctatcctatacaaggaaaagttaggtgaaaaaaagtcagtagttcgatcagag
aggatggaatggagaatgattgagctgcataaccagaggcgctcagatcttatagagggt
cttatatgtgagtaccagggaggaatcaatggtggctacagccaaaacgatactgacagc
aaagaaggagccaagctctttaagctgttagagtctgctgctgaacctgatttcctaatg
gcagatatgagtatggaagagttgaactgtttcaatagatataaagaaaagtttgaggcg
gccatggaaaaaaagatggaaaaatcaattgcaaaggccatggaagacgctggcttaggt
gaaagggatgtcaccccattcataaggattaggcttgttggactgacgaggttaagtaat
gatggacaccgaaatccaaaagaagccattttaacaatctggaatccaacggagacacag
agaaccgagttgacagaggggaaaatatacgcaatgaaggggctggtaccaatgaacata
gattcagaaacactgtacttacatgccagaggatctagctcaagattgcagcctttgtct
ccaaaagcttctgaaagttttcagccctttttcaacccccgtaaatcgatatcattgttg
gatcttggtgaaattcctcttggaagtgaatttgatatggcggcgtacgttgtttatgtt
ggaaacgcgtacacggatgttgaccaaaagaagcagtgggtgtttgttacagatggatcc
ttacaatattcagattcagggaacagtgcaaatagtcttctcgctataagcttcagcaca
tcatccatggatgacctccacagtcccctcattagccataatcttgtcggatctgtggta
ggattctgcaatctaataaaaagagccaaggatgttgaaaacgatatgtgggtttgtgag
gcgatggagaattcggactacttcttaaacgcagatgctgcttgcccttctcaccttaaa
accagcagtgaccatatccaaatatgggctaacctcactttttctaaatccatcatccac
caacttcggcagagagctctatttattgtcggtgcttgttaa
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