Raphanus sativus (radish): 108819817
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Entry
108819817 CDS
T06014
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108819817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108819817
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108819817
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
HECT type E3
108819817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
HEAT_EZ
K_channel_TID
Motif
Other DBs
NCBI-GeneID:
108819817
NCBI-ProteinID:
XP_056848437
UniProt:
A0A9W3CA12
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All DBs
Position
8:complement(6527817..6534764)
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AA seq
1890 aa
AA seq
DB search
METRSRKRAEATSTAPSSSSSSPPPPPSGPTTRSKRARLSSPSSSSAAVATTTTTAPSSS
TRSRSSRSAATTAAAAPMDTSTDSSGFRRGGRGNRGNNDNSNSDKGKEKEHDVRMRDRER
DRARQQLNMDAAAAAAAAADEDDDNDSEDGNGGFMHPNMSSASSALQGLLRKLGAGLDDL
LPSSGIGSGSSSHLNGRMKKILAGLRSEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDS
FVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCTAVVHYGAVSCFVARLLTIEYMDL
AEQSLQALKKISQEHPTACLRAGALMAVLSYLDFFSTGVQRVAVSTAANMCKKLPSDASD
YVMEAVPVLTNLLQYHDSKVLEYASICLTRIAEAFASYPEKLDELCNHGLVTQAATLISS
SNSGGGQASLGVSTYTGLIRLLSTCASGSPLGCRTLLLLGISSILKDILSGSGVSANASI
SPALSRPADQIFEIVNLANELLPPLPEGSISLPTSANTLVKGSGQKNSSPSTSGKQDDSL
RVSPKEKLLSDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIAKLMYFSTSEMIQ
SLIGDTNISSFLAGVLAWKDPQVLVPALQVAEILMEKLPETFSKMFVREGVVHAVDQLVL
VGKPSSHTDQENDCVPGSARSRRYRRRSSNANSDGNQSEELKNSVSANIGGNHNSLESPT
ASFMLRETVSSCAKAFKDKHFPSDGGEFDVGVTDDLLHLKNLCTKLTTGTNDHKVKGKGK
SKASGPCLGDFSASKEEYLIGIISEILGELSKGDGVSTFEFIGSGVVAALLNYFSYGYFS
KEKISEVDLPKLRQDGLRRFKAFLEIALPSDGNEGKIPPMTVLIQKLQDALSSLERFPVV
LSHPSRSLSGSARLSSGLSALAHPLKLRLCRAPGEKALRDYSSNIVLIDPLASIAAVEEF
LWPRVQRSESNVKPAAPAGNTEAGILPSGAGVSSPSSSTPASTTRHSSRSRSAIKIGDAS
KKEPVHEKGTSSSKGKGVMKLAQPDKGPQTRSSAQRRAVLDKDTLMKPASGDSSSEDEEL
DISPVDMDDALVIEEEDISDDDDDDEDEDVLDDSLPMCTPDKVHDVKLGDAVDDDGAGLA
TSGRQMNSALAGSSRTATARGSNSTDAGIGNLYGSRGALSFAAAAMAGLGAASGRGIRGS
RDMHGRTLNRSSDESSKLLFTAGGKQLSRHMTIYQAVQRQLALGEDDDDRLGGNDFISSD
GSRLSDIYTIMYQMPDSQANRLSAAGASSTTPSKSTKSATTNASVETQSYRASLLDSIVQ
GKLPCDLEKSNSTYNVLALLRVLEGLNQLGPRLRAQTVSDRFAEGKITSLDDPNTTAAKV
SHEEFINSKLTPKLARQIQDALALCSGSLPSWCYQLTTACPFLFPFQTRRQYFYSTAFGL
SRALNRLQQQQGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLE
VEYFGEVGTGLGPTLEFYTLLSHDLQKVSLGMWRSNAGDKLSLQTDRDEIQDGKSAAARD
RDIVQAPLGLFPRPWPSTADVSEGSRFHKVVEYFRLLGRVMAKALQDGRLMDVPLSTAFY
KLILGQELDLHDIILFDAELGKTLQELRVLVGRKHYLEAEGGGNSSAISDLCLRGSRIED
LCLDFTLPGYPECILRPGDDIVDINSLEDYISLVVDATVKRGVARQIEAFRSGFNQVFDI
KSLQIFTPSELDYLLCGRRELWEAETLVEHIKFDHGYTAKSPAIVNLLEIMGELTADQQR
AFCQFVTGAPRLPPGGLAVLNPKLTIVRKLSSTSNAAANGTGATETADDDLPSVMTCANY
LKLPPYSTKEIMYKKLLYAINEGQGSFDLS
NT seq
5673 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcggagccgcaagcgtgcggaggcgacctcaactgccccgtcatcgtcttct
tcctctcctcctcctcctccctcaggtcccaccactcgcagcaaacgcgctcgcctctcg
tctccctcttcctcttctgccgccgtcgctacaaccacaaccaccgcaccttcctcatcc
acccgctctcgttcttctcgctccgccgcaaccaccgccgccgcagctcccatggacacc
tccaccgattcttccggattccgccgcggcggacgaggcaacaggggaaacaacgacaac
agtaactccgacaaggggaaggagaaggagcacgacgttcgtatgagggatagagagaga
gacagagccagacagcagctcaacatggacgccgcggcagcagccgccgccgccgctgac
gaggacgacgacaatgacagcgaggacggcaacgggggattcatgcatcccaacatgagc
tcggcgagcagtgctttacaagggttgctgaggaagctcggagctgggcttgacgacttg
cttccttcctcaggtatcggctcgggctcttcctcccacttgaacgggaggatgaagaag
attctcgctggtttgcgttcagaaggagaggagggaaagcaggtcgaggctttgacgcag
ctctgcgagatgctatccattgggaccgaagactccttgagcaccttctctgttgattcc
ttcgtccctgtgcttgttggcctgcttaaccatgagagcaaccccgatattatgcttctt
gctgccagggctcttacccatctgtgtgatgttttaccgtcttcttgtactgccgttgtt
cattacggggccgtttcttgctttgtcgccagattgctaaccattgaatacatggacttg
gccgagcagtctctgcaagctctcaaaaagatatctcaggaacacccaactgcctgtttg
cgagctggtgctcttatggcagtgctatcatatctggatttcttctccaccggagtccag
cgtgtggcagtatctactgctgcaaatatgtgtaagaagttaccttctgatgcatctgat
tacgttatggaagctgtaccggtactgacaaacctacttcagtatcatgattcgaaggtt
ttggaatatgcttctatctgtttgactcggattgccgaagcatttgcatcgtaccctgag
aaattagatgaattatgcaaccatggcctggtgactcaagctgcgactctcatatcctct
agcaactcgggaggtgggcaagcatctctcggtgtttcaacatacacgggattaatccga
ttactttccacctgtgcgagcggttcacctcttgggtgcaggacattacttcttctcggt
attagtagcattcttaaggatattctgtcgggttctggtgtctctgctaatgcatctatc
tccccagcactgagcaggcctgcagatcagatttttgagatagtcaacctagcgaacgag
ctcctccctccactgccagaaggaagtatctcccttcctactagcgcaaacactttggtg
aaaggttcaggccaaaaaaattcttctccaagtacttcaggaaaacaagatgattctcta
agagtttcacctaaagaaaaattacttagtgatcaacccgaacttctgcagcaatttgga
ttggatcttcttccagttttagtgcagatttatggttctagtgtcaatggtactattcgt
cataaatgtctctcagttatcgcaaagttgatgtatttcagcacttcagaaatgattcaa
tctctaattggtgacacaaatatatcgagcttcttggctggtgtcttggcatggaaagat
ccacaagtcttggttcctgctctacaagtcgccgaaattctgatggaaaaacttcctgaa
actttctcgaaaatgtttgtgagggaaggggtggttcatgctgtagatcaacttgtcttg
gttggtaaacctagttctcatactgatcaggaaaatgactgcgtgcctggatctgcacga
tctaggcgttacagacggagaagtagtaatgccaattctgatggaaatcagtcggaagag
cttaagaattctgtgtctgctaacataggtggaaaccataattccctggaatctcctaca
gcgagcttcatgctaagggaaacagttagctcctgtgcaaaagcattcaaagacaagcac
ttcccatctgatggtggggaatttgatgttggagttacagatgatctcttacatctgaag
aatctttgcacgaagctaactactggtacaaatgaccataaagtgaagggaaagggaaaa
tctaaagcctctggtccatgccttggcgatttttctgctagcaaggaagaatacttgatt
ggtatcatctctgagatacttggcgagctaagcaaaggagatggcgtctcaacatttgag
tttattggcagtggtgtggttgcagctttgcttaactatttttcttatggctacttttcc
aaagagaaaatctccgaggttgatttgcccaaacttcgccaggatgggctcagaaggttc
aaagcttttctagaaattgcacttccttctgatggtaatgagggaaagatccctccaatg
actgttttgattcagaaacttcaagatgctttatcttcactggaacgctttccggtcgtc
cttagccatccctcaaggtcactcagtggaagtgctcgtctctcatctggtttgagtgct
ctggcacatcctttgaagttgcggttatgccgtgcacctggagaaaaggcactacgtgat
tactcctccaatattgttctcatagatccattggcaagcatagcagcggtggaggaattt
ctctggccccgagttcaacgcagtgaatctaatgtgaagccagcagcgcctgctggaaat
actgaggcaggcatattacctagcggtgctggtgtttcatcaccatcctcgtcaactcca
gcttccaccactcgtcattcttctagatctagatcagcaattaaaataggtgatgcctca
aagaaagaacctgtgcatgaaaaaggtaccagctcatctaaaggtaaaggtgttatgaag
ctggctcagccggataaggggcctcagacaaggagcagtgctcaaagaagagctgtcctt
gacaaagatacactaatgaaaccagctagcggagactccagctctgaggacgaagaattg
gatatatcccccgtcgacatggatgatgctttggtgattgaagaggaagacatttctgac
gacgatgatgacgatgaggatgaggatgtcttggatgacagtcttcccatgtgcacgcct
gataaggttcatgatgtaaaattgggagacgcagtggatgatgacggagccggtctagca
actagcggccgacagatgaattcagctttggcaggcagtagtcgaacagcaactgcaagg
ggatctaattctactgatgctggcattgggaatctttatgggtctaggggtgcactctcc
ttcgctgctgccgcgatggctgggcttggagctgctagtggtagaggtatcaggggaagt
agagacatgcatgggcgtaccctaaatcgaagttctgatgagtcctctaagttgttgttt
actgcgggaggaaagcaacttagtaggcatatgacgatttatcaggctgtgcaaagacaa
cttgcgctaggcgaagatgatgatgacagactcggtggcaacgatttcatctcgagtgat
ggaagcagattaagtgatatttatactatcatgtaccagatgccggacagccaagcgaat
aggttgtctgctgctggtgcaagttcaaccacaccatctaaatccaccaaatctgctact
actaacgcaagcgtagaaacccagtcgtatagggcatctcttttggatagtatcgtacaa
ggaaagcttccatgcgaccttgagaagtcaaattctacgtataatgtcctggcgttgttg
cgtgtattagaaggtttaaatcagcttggccctaggttaagagcccaaaccgtttctgat
cgtttcgcagagggtaaaattactagtctagatgatccgaatacaactgctgcgaaggtt
tctcatgaagaattcatcaacagcaaacttacaccaaaattagctcgacagatccaggat
gcgcttgctttgtgcagtggaagtcttccctcttggtgctaccagttgactacagcatgc
ccgtttttgtttccgtttcagacccggagacagtatttctattcaaccgcctttgggttg
tcgcgtgcattgaaccgcttgcagcagcagcaaggtgctgacggcagtggttctacgaac
gagcgagagatgaggatagggagattgcagcgccagaaagtgcgtgtatcccgaaataga
atattagattctgctgcgaaagttatggagatgtattctagccaaaaagctgtgcttgaa
gtagaatattttggtgaagttggtactggtctaggccccacacttgagttttacacactc
ctaagccatgatttgcaaaaggtttcccttgggatgtggagatcaaatgctggtgacaag
ttatccctgcagactgatagagatgagattcaagatgggaaatcagcagcagctagggac
agagatatagttcaggcaccgcttgggttgtttcctcggccctggccctcaacagctgac
gtatccgaaggtagccggtttcataaagttgttgaatatttccgccttttagggcgcgtg
atggccaaagcacttcaagatggacggctaatggacgtcccgttgagtacagcgttttat
aagcttattcttggtcaagagcttgatttgcatgatattatattgtttgatgctgaactt
ggcaagactttgcaagagcttcgtgttcttgttggccgtaagcactatctggaagcagaa
ggtggtggcaacagtagcgcgatttctgatttatgtttacgtggatcccgtattgaagat
ctttgcttggacttcaccctacctggctatcctgaatgcatattgagacctggagatgac
attgttgatattaatagtcttgaggactatatatccttggtcgttgatgctactgtcaag
agaggagttgcccggcagatcgaagccttcagatctggattcaatcaggtctttgacata
aagtctctacaaatattcaccccttccgagctggactacttgttgtgtggtcgtagagag
ttgtgggaggcggagactcttgttgaacatatcaagtttgatcacggttatactgcaaaa
agtccggcaatcgttaacttactggagatcatgggagagcttacagcggatcaacagcgg
gctttctgccagtttgtaactggagctcctaggcttcctcctggtggcttagctgttctg
aacccgaagctgacgattgtgagaaagctctcatcaacctcaaatgcagcagctaatggg
acaggggctacggaaacagcagacgacgatcttcccagcgtcatgacttgcgccaactac
cttaagctccctccttattctactaaggaaatcatgtacaagaaactgctctacgccatc
aacgaagggcagggatcgttcgacctctcatag
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