Raphanus sativus (radish): 108819844
Help
Entry
108819844 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108819844
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108819844
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108819844
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
RhgB_N
CarbopepD_reg_2
SpaA
Motif
Other DBs
NCBI-GeneID:
108819844
NCBI-ProteinID:
XP_018448369
UniProt:
A0A6J0KMW4
LinkDB
All DBs
Position
8:complement(7215761..7219528)
Genome browser
AA seq
687 aa
AA seq
DB search
MSPQTSYSYIKFDLEIWKRKEKMISQKKIVSSLICFLLLLLLPIAFSETTRNLRGISARA
PTVQQIKNKHGAKEVIVDNGIFRVTFSSPQGFITGIKYNEIDNVLNPHLRARGYWDITWQ
RENIFPKLDRIEGTNFRIITQNEEQVEISFSRKWNGGTDHVPLNVDKRYIIRTNTSGIYT
YGIFERQPEWPEVEMGLIRVAFKLNPDRFHYMVVADNRQRQMPTDDDRDIDSGRAKPLAY
KEAVQLTHPHNKMFKNQVDDKYQYTCEVKDNKVHGWISTKSNVGFWLISPSSEYRSGGPV
KQELTSHVGPTTLTTFISEHYVGSDMETRYKAGEAWKKVLGPVFIYLNSDPTGNNPQYSL
WEDAKRQAEQEVEAWPYDFVASSDFPTRQERGTITGRLFVNDRFLTPAGSAYVGLAPPGE
AGSWQTNTKGYQFWTQTNETGYFTIDNIRPGTYNLYGWVPGFIGDFTYPNLLNVAAGSEI
NLDRVVFKPPRNGPTLWEIGLPDRTAREYFVPEPYKNTMNPLYVNHTDKFRQYGLWQRYT
ELYPNHDLVYTIGVSNYSQDWFYAHVTRNIGSTYVPTTWQIVFELPYVNWRGSYTLQLAL
ASAARANLQVRFNNENSRPFFSTGDIGRDNAIARHGIHGAYHLYSIDVPGSLLRTGTNTI
YLRQSKALGPFEGLMYDYIRLEGPSTA
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgcagacatcttattcttacattaaattcgatcttgagatttggaaaagaaaa
gaaaagatgatttcgcagaagaagatagtttcatcgttgatatgtttccttctgttgctt
cttcttccgatagctttttctgagacgacgaggaacttaaggggaataagtgcaagagct
ccaacagtgcagcagataaaaaacaaacatggcgctaaagaggtgatagtggacaatgga
attttcagagtgactttctcgagtcctcaaggatttataactgggatcaaatacaacgaa
atcgacaatgttcttaatccacatctccgagctcgagggtactgggacataacatggcaa
agagaaaacattttcccaaaattggatagaatcgaaggaaccaacttcagaatcataact
caaaacgaagaacaagtggagatttctttctctcgaaaatggaatggtggtaccgatcat
gttccattaaacgtagacaagagatatattatccgtaccaatacttcaggaatctacacg
tatggaatttttgagagacagcccgaatggccagaagtggagatgggtctaattcgagtc
gcattcaaactcaaccctgatagattccattacatggtggtggcagataatcggcaaaga
caaatgccaacagacgatgaccgtgacatcgacagtggccgtgccaagccccttgcttac
aaagaggctgtacaattgactcatcctcacaacaaaatgttcaaaaaccaggtggatgat
aagtaccagtacacatgtgaggtcaaggacaacaaggtgcatggttggatctcgaccaag
tccaatgttggtttctggctcatctcaccgagcagcgaataccgctctggtggaccggtc
aaacaggaactcacgtctcacgtcggtcccacgaccctcacgacctttataagcgagcat
tatgttggttcggacatggagacaaggtacaaagctggtgaagcgtggaaaaaggtcttg
ggacctgttttcatttacttgaactctgatcctaccggcaataatccacaatattcatta
tgggaagatgctaaacgacaggctgaacaagaagttgaagcatggccgtacgattttgta
gcgtcttctgacttccctactcgtcaagaaagaggaaccattaccggtcgtctctttgtc
aacgacagattcttgactccggcaggatctgcatacgtcggtttagcaccacctggagaa
gctggttcatggcagacaaataccaagggataccaattctggacgcaaacgaacgaaacc
ggctatttcacgattgataacattagaccgggaacgtataatctatacggatgggttccc
ggttttataggagactttacatacccaaacctacttaacgtagctgcaggttcagagata
aatcttgatagagttgtgttcaagcctcctaggaatggtccaacattgtgggagattggt
ttaccggaccgaaccgcaagagaatactttgtaccggaaccatacaagaatacaatgaat
cccttatacgtgaaccacaccgacaagtttaggcagtacgggttatggcaacgttacaca
gagttatatccaaatcatgatcttgtctacacaattggagttagcaactatagtcaagac
tggttctacgctcatgtcacaaggaacattggttcgacctatgtaccaacgacatggcag
atcgtgtttgaacttccatatgtgaactggcgaggtagctacacattgcaactagctttg
gcctcggctgcacgggctaacttacaagtacggttcaacaatgaaaactctaggccattc
ttctcgacgggtgacatcggaagagataatgctattgcaagacatggaatccatggagcc
tatcatctttatagcatcgatgtacctggaagcttactaagaaccgggacaaacacaatc
tatctacgtcagtctaaagcgttgggaccgtttgaaggtcttatgtatgattatattcgt
cttgaaggcccttctacagcttag
DBGET
integrated database retrieval system
