Raphanus sativus (radish): 108821069
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Entry
108821069 CDS
T06014
Name
(RefSeq) regulator of nonsense transcripts UPF3-like
KO
K14328
regulator of nonsense transcripts 3
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03013
Nucleocytoplasmic transport
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108821069
03015 mRNA surveillance pathway
108821069
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108821069
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108821069
mRNA cycle factors
P-body specific factors
108821069
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
Motif
Other DBs
NCBI-GeneID:
108821069
NCBI-ProteinID:
XP_056856756
UniProt:
A0A9W3CZ65
LinkDB
All DBs
Position
Unknown
AA seq
433 aa
AA seq
DB search
MCFHSYKTQKHSRAYFGFKSPEDVYEFAAFFNGHVFVNENGAQFKAIVEYGPSQRVPKPC
DKKDPREGSITKDPDYIQFLKLIAQPVENLPSAEVQLERREAEQSGASKPAPIVTPLMEF
IRQKRATVIGSQQQSLLDVRRGGRRARAVSSNKPSSRPSKRNSEKKKYVEKHNSKTVRSS
KQDYYQPNSSGKDIPVTETASVVDSSLPGIALTMDSGKKKILLLKRDRDDPVNSPPQQTE
TNLTGSSSTSRQNQKVHVGGRLIKGILVRNEPRPSQSSTFVQPEPRLEPSEPENCTRPPR
AGKDYHVSGTNIEKQERRPRNKDRPGRVVWAPLRRPDGSNISEDQLSTSSAANNGEVKQR
TLLQRSGEVANSSDGHSLENGSARHSSRRVGSRNRKEDSFAMTGEGKPSRRGGGGGPTSY
EKQKWIQKSSSGT
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtgcttccacagctataagacgcagaagcattcacgggcctactttggtttcaagtca
ccagaagatgtttatgagttcgctgcttttttcaacggccatgtgtttgttaatgaaaat
ggtgctcagttcaaggccatagttgaatatgggccttcacagcgtgtgcccaaaccatgt
gacaagaaagatcctcgtgaaggctctattaccaaagaccctgattatattcagttcctt
aagctcattgctcaacctgttgagaatctccctagtgctgaagtccagttggaacgaaga
gaagccgagcagtctggtgcttcaaagccggctcctattgttacccctcttatggaattc
atacgtcagaagcgtgctactgtgattggatctcagcaacagagtttattagatgttcgg
agaggaggcagaagagccagagcagtctcgtcaaacaagccaagttcaaggccttcgaaa
cgaaactctgaaaagaaaaagtatgtggaaaagcacaattcaaaaaccgtccgcagttcc
aagcaagattattatcagccaaattcaagtggaaaggacataccagtaactgaaactgcc
tctgtcgtggatagttctctcccagggattgcattgactatggattctgggaagaaaaag
atcttgctcctgaaaagagaccgagacgatcctgttaactctccaccacaacagacagaa
actaatcttacgggaagctcctcgacttcaagacagaatcagaaggttcatgtcggtggg
agattgatcaagggaatacttgtgagaaatgagccgcgacctagccagtcttcaactttt
gtccagcctgagccaagactggaaccctcagaaccagaaaactgcacgcgtcctcctcga
gcagggaaagactatcatgtttctggtaccaatattgagaagcaagagaggcgtccaaga
aacaaggatagacctggtcgtgttgtgtgggctcctctccgtcgtcctgacgggtccaat
atcagcgaggaccaactttcaacttcttcagcagcaaataatggagaagtgaaacaaagg
acgttgttgcaaagatctggagaagtggcgaactcctctgatggacactctcttgagaat
ggttctgctagacattctagtcgccgtgttggatctcgcaatagaaaagaagacagcttt
gcgatgactggtgagggtaaaccatctcgtagaggaggtggtggtggtcccacttcatat
gagaagcaaaagtggatccaaaaatcatcatcgggtacttga
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