Raphanus sativus (radish): 108821560
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Entry
108821560 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108821560
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108821560
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108821560
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GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
CarbopepD_reg_2
RhgB_N
SpaA
Motif
Other DBs
NCBI-GeneID:
108821560
NCBI-ProteinID:
XP_018450068
UniProt:
A0A6J0KR42
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Position
8:7798256..7800383
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AA seq
687 aa
AA seq
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MSPQTSYSNIKFDLEIWKRKEKMISQKKIVSSLICFLLLLLLPIAFSETTRNLKGKSARA
PTVQQIKNKHGAKEVIVDNGIFRVTFSSPQGLITGIKYNEIDNVLNPHLRARGYWDITWQ
RENILPKLDRVEGTNFRIITQNEEQVEISFSRKWNGGTDHVPLNVDKRYIIRTNTSGIYT
YGIFERKPEWPEVEMGLIRVAFKLNPDRFHYMVVADNRQRQMPTDDDRDIHSGRAKPLAY
KEAVQLTHPHNKMFKNQVDDKYQYTCEVKDNKVHGWISTKSNVGFWFISPSSEYRSGGPV
KQELTSHVGPTTLTTFISEHYVGSDMETRYKAGEVWKKVLGPVFVYLNSDSTGNNPQYSL
WEDAKRQAEQEVEAWPYGFVASSDFPTRQERGTITGRLFVNDRFLTPAGSAYVGLAPPGE
AGSWQTNTKGYQFWTQTNETGYFTIDNIRPGTYNLYGWVPGFIGDFTYQNQVNVAAGSEI
SLDRIVFQPPRNGPTLWEIGVPDRTAREYFVPEPYKNTMNPLYVNHTDKFRQYGLWQRYT
ELYPNHDLVYTIGVSNYSQDWFYAHVTRNIGSTYVPTTWQIVFELPYVNWRGSYTLQLAL
ASAARANLQVRFNNENSRPFFSTGNIGRDNAIARHGIHGAYHLYSIDVPGSLLRTGTNTI
YLRQSKALGPFEGLMYDYIRLEEPSTA
NT seq
2064 nt
NT seq
+upstream
nt +downstream
nt
atgtctccgcagacatcttattctaacattaaattcgatcttgagatttggaaaagaaaa
gaaaagatgatttcgcagaagaagatagtttcatcgttgatatgtttccttctgttgctt
cttcttccgatagctttttctgagacgacaaggaacttaaagggaaaaagtgcaagagct
ccaacagtgcagcagataaaaaacaaacatggcgctaaagaggtgatagtggacaatgga
atattcagagtgactttctcgagtcctcaaggacttataactgggatcaaatacaacgaa
atcgacaatgttcttaatccacatctccgagctcgagggtactgggacataacatggcaa
agagaaaacattctcccgaaattggatagagtcgaaggaaccaacttcagaatcataact
caaaacgaagaacaagtggagatttctttctctcgaaagtggaatggtggtaccgatcat
gttccattaaacgtagacaagagatatattatacgcacaaatacatcaggaatctacacg
tatgggatttttgagagaaagcccgaatggccagaagtggagatgggtctaattcgagtc
gcattcaaactcaaccctgatagattccattacatggtggtggcggataatcggcaaaga
caaatgccaacagacgatgaccgtgacatccacagtggccgtgctaagccccttgcttac
aaagaggctgtacaattgactcatcctcacaataaaatgttcaaaaaccaggtggatgat
aagtatcagtacacgtgtgaggtcaaggacaacaaggtgcatggttggatatcgaccaag
tccaacgttggtttctggttcatctcaccgagcagcgaataccgctctggtggaccggtc
aaacaggagctcacgtctcacgtcggtcccactaccctcacgacctttataagcgagcat
tatgttggttcggacatggagacaaggtacaaagctggtgaagtgtggaaaaaggtcttg
ggacctgttttcgtttacttgaactctgattctaccggcaataatccacaatattcattg
tgggaagatgctaaacgacaggctgaacaagaagttgaagcatggccgtacggttttgta
gcgtcctctgactttccaactcgtcaagaaagagggaccattaccggtcgactctttgtc
aacgacaggttcttgactccggcaggatctgcatacgtcggtttagcaccaccaggagaa
gctggttcatggcagacaaatactaagggataccaattttggacgcaaacgaacgaaacc
ggctatttcacgattgataacattagaccgggaacgtataatctatacggatgggttccc
ggttttataggagactttacataccaaaaccaagtcaacgtagctgcaggttcagagata
agtcttgatagaattgtgttccagcctcctaggaatggtccaacattgtgggagattggt
gtaccggaccgaaccgccagagaatactttgtaccggaaccatacaagaatacaatgaat
cccttatacgtaaaccacaccgacaagtttaggcagtacgggttatggcaacgttacaca
gagttatatccaaatcatgatcttgtctacacaattggagttagtaactatagtcaagac
tggttctacgctcatgtcacaaggaacattggttcgacctatgtaccaacgacatggcag
atcgtgtttgaacttccatatgtgaactggcgaggtagctacacattgcaactagctttg
gcctcggctgcacgggctaacttacaagtacggttcaacaatgaaaactctaggccattc
ttctcgacgggtaacatcggaagagataatgctattgcaagacatggaatccatggagcc
taccatctttatagcatcgatgtgcccggaagcttactaagaaccgggaccaacacaatc
tatctacgtcagtctaaagcgttggggccgtttgaaggtcttatgtatgattacattcgt
cttgaagagccttctacagcttag
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