Raphanus sativus (radish): 108821726
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Entry
108821726 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108821726
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
rsz04121
]
108821726
Enzymes [BR:
rsz01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108821726
Ubiquitin system [BR:
rsz04121
]
Ubiquitin ligases (E3)
HECT type E3
108821726
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
K_channel_TID
Motif
Other DBs
NCBI-GeneID:
108821726
NCBI-ProteinID:
XP_056848441
UniProt:
A0A9W3CA24
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All DBs
Position
8:complement(6559157..6567584)
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AA seq
1887 aa
AA seq
DB search
METRSRKRAEATSTAPSSSSSSPPPPPSGPTTRSKRARLSSPSSSSAAVATTTTTAPSSS
TRSRSSRSAATTAAAAPMDTSTDSSGFRRGGRGNRGNNDNSNSDKGKEKEHDVRMRDRER
DRARQQLNMDAAAAAAAAADEDDDNDSEDGNGGFMHPNMSSASSALQGLLRKLGAGLDDL
LPSSGIGSGSSSHLNGRMKKILAGLRSEGEEGKQVEALTQLCEMLSIGTEDSLSTFSVDS
FVPVLVGLLNHESNPDIMLLAARALTHLCDVLPSSCTAVVHYGAVSCFVARLLTIEYMDL
AEQSLQALKKISQEHPTACLRAGALMAVLSYSGFLLHRIQXSTAANMCKKLPSDASDYVM
EAVPVLTNLLQYHDSKVLEYCSICLTRIAEAFASYPEKLDELCNHGLVTQAATLISSXNS
GGGQASLGVSTYTGLIRLPSTCASGSPLGCRTLLLLGISSILKXILSGSGVSANASISPA
LSRPADQIFEIVNLANELPPPLPEGSISLPTSANTLVKGSGQKNSSPSTSGKQDDSLRVS
PKEKLLSDQPELLQQFGLDLLPVLVQIYGSSVNGTIRHKCLSVIAKLMYFSTSEMIQSLI
GDTNISSFLAGVLAWKDPQVLVPALQVAEILMEKLPETFSKNVCEGRVVHAVDQLVLVGK
PSSHTDQENDCVPGSARSRRYRRRSSNANSDGNQSEELKNSVSANIGEKPIPLESPTASF
MLRETVSSCAKAFKDKHFPSDGGEFDVGVTDDLLHLKNLCTKLTTGTNDHKVXGKGKSKA
SGPCLGDFSASKEEYLIGIISEILGELSKGDGVSTXEFIGSGVVAALLNYFSYGYFSKEK
ISEVDLPKLRQDGLRRFKAFLEIALPSDGNEGKIPPMTVLIQKLQDALSSLERFPVVLSH
PSRSLSGSARLSSGLSALAHPLKLRLCRAPGEKALRDYSSNIVLIDPLASIAAVEEFLWP
RVQRSESNVKPAAPAGNTEAGILPSGAGVSSPSSSTPASTTRHSSRSRSAIKIGDASKKE
PVHEKGTSSSKGKGVMKLAQPDKGPQTRSSAQRRAVLDKDTLMKPASGDSSSEDEELDIS
PVDMDDALVIEEEDISDDDDDDEDEDVLDDSLPMCTPDKVHDVKLGDAVDDDGAGLATSG
RQMNSALAGSSRTATARGSNSTDAGIGNLYGSXGALSFAAAAMAGLGAASGRGIRGSRDM
HGRTLNRSSDESSKLLFTAGGKQLSRHMTIYQAVQRQLALGEDDDDRLGGNDFISSDGSR
LSDIYTIMYQMPDSQANRLSAAGASSTTPSKSTKSATTNASVETQSYRASLLDSIVQGKL
PCDLEKSNSTYNVLALLRVLEGLNQLGPRLRAQTVSDRFAEGKITSLDDPNTTAAKVSHE
EFINSKLTPKLARQIQDALALCSGSLPSWCYQLTTACPFLFPFQTRRQYFYSTAFGLSRA
LNRLQQQQGADGSGSTNEREMRIGRLQRQKVRVSRNRILDSAAKVMEMYSSQKAVLEVEY
FGEVGTGLGPTLEFYTLLSHDLQKVSLGMWRSNAGDKLSLQTDRDEIQDGKSAAARDRDI
VQAPLGLFPRPWPSTADVSEGSRFHKVVEYFRLLGRVMAKALQDGRLMDVPLSTAFYKLI
LGQELDLHDIILFDAELGKTLQELRVLVGRKHYLEAEGGGNSSAISDLCLRGSRIEDLCL
DFTLPGYPECILRPGDDIVDINSLEDYISLVVDATVKRGVARQIEAFRSGFNQVFDIKSL
QIFTPSELDYLLCGRRELWEAETLVEHIKFDHGYTAKSPAIVNLLEIMGELTADQQRAFC
QFVTGAPRLPPGGLAVLNPKLTIVRKLSSTSNAAANGTGATETADDDLPSVMTCANYLKL
PPYSTKEIMYKKLLYAINEGQGSFDLS
NT seq
5664 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcggagccgcaagcgtgcggaggcgacctcaactgccccgtcatcgtcttct
tcctctcctcctcctcctccctcaggtcccaccactcgcagcaaacgcgctcgcctctcg
tctccctcttcctcttctgccgccgtcgctacaaccacaaccaccgcaccttcctcatcc
acccgctctcgttcttctcgctccgccgcaaccaccgccgccgcagctcccatggacacc
tccaccgattcttccggattccgccgcggcggacgaggcaacaggggaaacaacgacaac
agtaactccgacaaggggaaggagaaggagcacgacgttcgtatgagggatagagagaga
gacagagccagacagcagctcaacatggacgccgcggcagcagccgccgccgccgctgac
gaggacgacgacaatgacagcgaggacggcaacgggggattcatgcatcccaacatgagc
tcggcgagcagtgctttacaagggttgctgaggaagctcggagctgggcttgacgacttg
cttccttcctcaggtatcggctcgggctcttcctcccacttgaacgggaggatgaagaag
attctcgctggtttgcgttcagaaggagaggagggaaagcaggtcgaggctttgacgcag
ctctgcgagatgctatccattgggaccgaagactccttgagcaccttctctgttgattcc
ttcgtccctgtgcttgttggcctgcttaaccatgagagcaaccccgatattatgcttctt
gctgccagggctcttacccatctgtgtgatgttttaccgtcttcttgtactgccgttgtt
cattacggggccgtttcttgctttgtcgccagattgctaaccattgaatacatggacttg
gccgagcagtctctgcaagctctcaaaaagatatctcaggaacacccaactgcctgtttg
cgagctggtgctcttatggcagtgctatcatattctggatttcttctccaccggatccag
taatctactgctgcaaatatgtgtaagaagttaccttctgatgcatctgattacgttatg
gaagctgtaccggtactgacaaacctacttcagtatcatgattcgaaggttttggaatat
tgctctatctgtttgactcggattgccgaagcatttgcatcgtaccctgagaaattagat
gaattatgcaaccatggcctggtgactcaagctgcgactctcatatcctctngcaactcg
ggaggtgggcaagcatctctcggtgtttcaacatacacgggattaatccgattaccttcc
acctgtgcgagcggttcacctcttgggtgcaggacattacttcttctcggtattagtagc
attcttaagngtattctgtcgggttctggtgtctctgctaatgcatctatctccccagca
ctgagcaggcctgcagatcagatttttgagatagtcaacctagcgaacgagcttcctcct
ccactgccagaaggaagtatctcccttcctactagcgcaaacactttggtgaaaggttca
ggccaaaaaaattcttctccaagtacttcaggaaaacaagatgattctctaagagtttca
cctaaagaaaaattacttagtgatcaacccgaacttctgcagcaatttggattggatctt
cttccagttttagtgcagatttatggttctagtgtcaatggtactattcgtcataaatgt
ctctcagttatcgcaaagttgatgtatttcagcacttcagaaatgattcaatctctaatt
ggtgacacaaatatatcgagcttcttggctggtgtcttggcatggaaagatccacaagtc
ttggttcctgctctacaagtcgccgaaattctgatggaaaaacttcctgaaactttctcg
aaaaatgtttgtgagggaagggtggttcatgctgtagatcaacttgtcttggttggtaaa
cctagttctcatactgatcaggaaaatgactgcgtgcctggatctgcacgatctaggcgt
tacagacggagaagtagtaatgccaattctgatggaaatcagtcggaagagcttaagaat
tctgtgtctgctaacataggtgaaaaaccaattcccctggaatctcctacagcgagcttc
atgctaagggaaacagttagctcctgtgcaaaagcattcaaagacaagcacttcccatct
gatggtggggaatttgatgttggagttacagatgatctcttacatctgaagaatctttgc
acgaagctaactactggtacaaatgaccataaagtgnaaggaaagggaaaatctaaagcc
tctggtccatgccttggcgatttttctgctagcaaggaagaatacttgattggtatcatc
tctgagatacttggcgagctaagcaaaggagatggcgtctcaacanttgagtttattggc
agtggtgtggttgcagctttgcttaactatttttcttatggctacttttccaaagagaaa
atctccgaggttgatttgcccaaacttcgccaggatgggctcagaaggttcaaagctttt
ctagaaattgcacttccttctgatggtaatgagggaaagatccctccaatgactgttttg
attcagaaacttcaagatgctttatcttcactggaacgctttccggtcgtccttagccat
ccctcaaggtcactcagtggaagtgctcgtctctcatctggtttgagtgctctggcacat
cctttgaagttgcggttatgccgtgcacctggagaaaaggcactacgtgattactcctcc
aatattgttctcatagatccattggcaagcatagcagcggtggaggaatttctctggccc
cgagttcaacgcagtgaatctaatgtgaagccagcagcgcctgctggaaatactgaggca
ggcatattacctagcggtgctggtgtttcatcaccatcctcgtcaactccagcttccacc
actcgtcattcttctagatctagatcagcaattaaaataggtgatgcctcaaagaaagaa
cctgtgcatgaaaaaggtaccagctcatctaaaggtaaaggtgttatgaagctggctcag
ccggataaggggcctcagacaaggagcagtgctcaaagaagagctgtccttgacaaagat
acactaatgaaaccagctagcggagactccagctctgaggacgaagaattggatatatcc
cccgtcgacatggatgatgctttggtgattgaagaggaagacatttctgacgacgatgat
gacgatgaggatgaggatgtcttggatgacagtcttcccatgtgcacgcctgataaggtt
catgatgtaaaattgggagacgcagtggatgatgacggagccggtctagcaactagcggc
cgacagatgaattcagctttggcaggcagtagtcgaacagcaactgcaaggggatctaat
tctactgatgctggcattgggaatctttatgggtctnagggtgcactctccttcgctgct
gccgcgatggctgggcttggagctgctagtggtagaggtatcaggggaagtagagacatg
catgggcgtaccctaaatcgaagttctgatgagtcctctaagttgttgtttactgcggga
ggaaagcaacttagtaggcatatgacgatttatcaggctgtgcaaagacaacttgcgcta
ggcgaagatgatgatgacagactcggtggcaacgatttcatctcgagtgatggaagcaga
ttaagtgatatttatactatcatgtaccagatgccggacagccaagcgaataggttgtct
gctgctggtgcaagttcaaccacaccatctaaatccaccaaatctgctactactaacgca
agcgtagaaacccagtcgtatagggcatctcttttggatagtatcgtacaaggaaagctt
ccatgcgaccttgagaagtcaaattctacgtataatgtcctggcgttgttgcgtgtatta
gaaggtttaaatcagcttggccctaggttaagagcccaaaccgtttctgatcgtttcgca
gagggtaaaattactagtctagatgatccgaatacaactgctgcgaaggtttctcatgaa
gaattcatcaacagcaaacttacaccaaaattagctcgacagatccaggatgcgcttgct
ttgtgcagtggaagtcttccctcttggtgctaccagttgactacagcatgcccgtttttg
tttccgtttcagacccggagacagtatttctattcaaccgcctttgggttgtcgcgtgca
ttgaaccgcttgcagcagcagcaaggtgctgacggcagtggttctacgaacgagcgagag
atgaggatagggagattgcagcgccagaaagtgcgtgtatcccgaaatagaatattagat
tctgctgcgaaagttatggagatgtattctagccaaaaagctgtgcttgaagtagaatat
tttggtgaagttggtactggtctaggccccacacttgagttttacacactcctaagccat
gatttgcaaaaggtttcccttgggatgtggagatcaaatgctggtgacaagttatccctg
cagactgatagagatgagattcaagatgggaaatcagcagcagctagggacagagatata
gttcaggcaccgcttgggttgtttcctcggccctggccctcaacagctgacgtatccgaa
ggtagccggtttcataaagttgttgaatatttccgccttttagggcgcgtgatggccaaa
gcacttcaagatggacggctaatggacgtcccgttgagtacagcgttttataagcttatt
cttggtcaagagcttgatttgcatgatattatattgtttgatgctgaacttggcaagact
ttgcaagagcttcgtgttcttgttggccgtaagcactatctggaagcagaaggtggtggc
aacagtagcgcgatttctgatttatgtttacgtggatcccgtattgaagatctttgcttg
gacttcaccctacctggctatcctgaatgcatattgagacctggagatgacattgttgat
attaatagtcttgaggactatatatccttggtcgttgatgctactgtcaagagaggagtt
gcccggcagatcgaagccttcagatctggattcaatcaggtctttgacataaagtctcta
caaatattcaccccttccgagctggactacttgttgtgtggtcgtagagagttgtgggag
gcggagactcttgttgaacatatcaagtttgatcacggttatactgcaaaaagtccggca
atcgttaacttactggagatcatgggagagcttacagcggatcaacagcgggctttctgc
cagtttgtaactggagctcctaggcttcctcctggtggcttagctgttctgaacccgaag
ctgacgattgtgagaaagctctcatcaacctcaaatgcagcagctaatgggacaggggct
acggaaacagcagacgacgatcttcccagcgtcatgacttgcgccaactaccttaagctc
cctccttattctactaaggaaatcatgtacaagaaactgctctacgccatcaacgaaggg
cagggatcgttcgacctctcatag
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