Raphanus sativus (radish): 108821944
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Entry
108821944 CDS
T06014
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108821944
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108821944
Enzymes [BR:
rsz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108821944
Spliceosome [BR:
rsz03041
]
Complex C
Other components
Step II factors
108821944
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_19
AAA_16
Cas3-like_C_2
nSTAND3
AAA_30
TsaE
ABC_tran
PhoH
SLFN-g3_helicase
Sigma54_activ_2
ATPase
Flavi_DEAD
T2SSE
Motif
Other DBs
NCBI-GeneID:
108821944
NCBI-ProteinID:
XP_018450441
UniProt:
A0A6J0KSF2
LinkDB
All DBs
Position
8:10187389..10191598
Genome browser
AA seq
1077 aa
AA seq
DB search
MMKKLNHLALVSHVCNELETHVGVGPKYLAEYIIHLGRNSETADELDKKLKKDDAELPDY
LVRSLLTAIRDIYPPPQPPKSKASAIKEDTKDRRDRDRDDRRSDRSREGGDRSRGGGRSD
RGANEPELYEVYKGRVTRVMDSGCFVQFDRFRGKEGLVHVSQMATRSVVKRDMEVYVKVV
SIKEGGKYSLSIKDVDQNTGTDLKKPSSYDDDDDLGRSNPSYRTKDGHVTKTGISGIRIV
KEINVAAPSRRRLKRMSSPERWEAKQLIASGALKATEFPDYDEDGDVMLYQEEEELEIEM
NEEVPAFLQGRTRYSADMSPVRVFKNPEGSLSRAAALQSALTKERREMREQQQRTVLDSI
PKDLNRPWEDPMPETGERHLAHELRGVGLSAYGMPEWKKDAFGKTPSFGKRSKLSIQEQR
ESLPIYMLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVA
AMSVAKRVAEEFGCRLGEEVGFAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSHYSVI
MLDEAHERTIHTDVLFGLLKKLLERRPDLRLIVTSATLDADKFSEYFFKCNIFIIPGRTF
PVEILYKKQPESDYLDAALNTVLEIHLTEPEGDILLFLTGQEEIDSACQSLYERMKSLGK
NVPELIILPVYSALPSEMQSRIFDPPPPGTRKVVVATNIAEASLTIDGIYYVVDPGFAKQ
NVYNPKQGLESLVITPISQASAKQRAGRAGRTGPGKCYRLYTESAYRNEMPPTSIPEIQR
VNLGMTTLTMKAMGINDLLSFDFMDPPQPQALISAMEQLYSLGALDEEGLLTRLGRKMAE
FPLEPPLSKMLLASVDLGCSDEVLTVIAMIQTENIFYRPREKQAQADQKKAKFFQPEGDH
LTLLAVYEAWKAKNFSSQWCVENFIQSRSLRRAQDVRKQLLSIMDRYKLDVVSAGRNLTK
IRKAITAGFFFHGARRDQQEGGYRTLVENQPVYIHPGSALFQRQPDWVIYHDLVMTTKEY
MREVIVIDPKWLVELAPRFFKVADPTHMSKRKRQERIEPLYDRYHEPNSWRLSKRRG
NT seq
3234 nt
NT seq
+upstream
nt +downstream
nt
atgatgaagaaactaaaccacctagctctagtctcccacgtctgtaacgaactggaaacg
catgtaggtgtaggtccaaagtacttagcggagtacataatccatctcggccgcaactcc
gagaccgccgatgaactcgataagaagctgaagaaggacgacgcagagcttcctgattat
ttagtccgctcgctcttaactgcaatccgcgacatctaccctcctcctcagcccccaaaa
tccaaagcgtcagcgatcaaggaggatactaaggatcgaagggatcgggatcgagatgat
agaagaagtgatagatcacgtgaaggaggtgataggtcacgtggtggtggaagaagtgat
aggggcgcaaacgagcctgagttgtatgaggtttacaaaggtagagtgactagggtgatg
gactctggctgctttgttcagtttgataggtttagaggcaaagaaggtttggttcatgtt
tctcagatggctaccagaagtgtggtgaagcgggatatggaggtttatgtcaaagttgta
tctattaaagagggtggtaagtatagtctttccatcaaggatgttgatcagaacacgggt
acagacttgaagaagccttcttcatatgatgatgatgatgatttagggaggagtaatcca
tcgtatagaacaaaggatggccacgtcaccaagactgggatttcaggtatcaggattgtt
aaggagattaatgtagcagcaccttcacgcagacgactgaagaggatgagctcccctgag
agatgggaagcgaagcagctcattgcttctggtgccttgaaagctaccgagtttccagat
tacgatgaggatggagatgtgatgctttatcaggaggaagaagagcttgagattgagatg
aacgaagaagtacctgccttcttgcaagggcggaccaggtactctgctgacatgtctcct
gtcagggttttcaagaatccagaaggctccttgagccgtgctgctgcacttcagtctgcg
ctcaccaaggagaggagagaaatgagggaacagcagcagagaacagtgctcgactctatc
cccaaggatctgaatcgtccttgggaagatcctatgcctgagactggtgaaaggcatctt
gcacatgagcttagaggtgttggattgtctgcttatggcatgcctgagtggaagaaggat
gctttcgggaaaactccatcttttgggaaaagatcaaagctttctatccaggagcaaagg
gagagccttcctatatacatgcttaaaaaggagctgatacaggctgtccatgataatcaa
gtcttggtggtcattggtgaaactggttcaggtaagacgacacaggtgactcagtatctt
gccgaagctggttacactacgaaaggaaaaattgggtgtacgcagcctcgcagggtggca
gcaatgtctgttgcaaagagagtagctgaggagtttggttgtcgtttgggagaggaggta
gggtttgctatccggtttgaggattgtactggaccagacacggtgatcaagtacatgact
gatggtatgcttcttagggagattctgattgatgaaaacctctctcactactctgttata
atgcttgacgaagctcacgagcggacgattcacactgacgtcttgtttggtcttctaaaa
aagctgttggaacgcaggcctgaccttcgtctgattgtcacatccgccacgttagacgca
gacaaattctctgagtatttcttcaaatgcaacatctttataattcctggaagaaccttc
cctgtagagattctttataaaaaacagccagaaagcgattacttggatgcagctctgaac
acagttcttgagattcacttgactgagccagagggtgacattcttctctttttgacggga
caggaagagattgattctgcatgtcagtctctgtacgagagaatgaaaagtctaggcaaa
aacgttcctgaactcatcatactccctgtttacagtgcccttcctagcgaaatgcagtct
agaatatttgatcctcctcctcctggcacccggaaagtagttgtagctacaaacatcgca
gaagcttctttgacaatagatgggatatattacgttgttgatcccgggtttgcgaagcag
aacgtgtataatccaaagcaaggactagagtcgcttgtcataactccaatctcacaggca
tcagcgaagcagagagctgggcgtgctggtcgtactggccctgggaaatgttaccgtctc
tacacggagagcgcgtaccgtaacgagatgcctcctacgtcgatccctgagatccagagg
gttaacctgggaatgacaaccctcaccatgaaagcaatgggtatcaatgacctgttgtcg
tttgacttcatggatccaccccaaccgcaagccttgatctctgctatggagcagctgtac
agcctgggagctttggatgaggaaggactgttgacaaggctaggtagaaaaatggccgag
tttcctctcgagccaccgctctctaaaatgttgctagcgagtgtggatcttggttgcagc
gacgaggttttgacggtgattgctatgatccagacggaaaacatattttatagaccaaga
gagaagcaagctcaagcagaccagaagaaggcgaagtttttccagcctgaaggtgatcac
ttgacattgctagctgtgtatgaagcttggaaggctaagaacttctcaagccaatggtgt
gttgagaacttcatacagtcacggtcgttacgacgtgctcaagacgtgaggaaacagctt
ctcagcattatggacagatataaactagacgtggtaagcgcggggaggaacttgacgaag
ataaggaaagcaatcacggcaggattcttcttccatggagcaagaagagatcagcaggaa
ggaggttacaggacgctagtggagaatcaaccggtttacatacacccgggcagtgcattg
ttccaaagacaaccggattgggtgatatatcatgatcttgtgatgacgaccaaggagtac
atgagagaagtgattgttattgacccgaagtggcttgtggagctagctccaaggtttttc
aaggtggctgatccaacacatatgagcaagcgtaagcgccaggaacgcatagagcctctg
tatgatcgttatcacgagcctaactcatggcgtctcagcaaaagacgtggttga
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