Raphanus sativus (radish): 108821952
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Entry
108821952 CDS
T06014
Name
(RefSeq) SNF2 domain-containing protein CLASSY 1
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108821952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108821952
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
108821952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
SAWADEE
Motif
Other DBs
NCBI-GeneID:
108821952
NCBI-ProteinID:
XP_018450454
UniProt:
A0A6J0KRA1
LinkDB
All DBs
Position
Unknown
AA seq
1279 aa
AA seq
DB search
MKRKRYYQLNHTFDPCPFEVFSSGTWKAVEYLRVERGSMTMRLLEKGHVLDDVKPFQWLR
LRSRKATTIDCTTFLRHGVDVCVLYQKDEATPEDDQDPVWVDAKIVSIERKPHEPECLCE
FYVSIYIDQGCISSEKHRMNRASVLMGLDQISILQKFPKEQSVDRFYRWRYSEDSASLVK
TRLTLGKFMSDLSWLLVTSVLKSTVFHIKTIQNKMVYLIVNDEEESSSSSCLSAMNITVE
DGVYMSKVVTFNPDERNGTPALDYVHVEVEEESEEEEEEEVMELRRSKRRNMRPERYGFS
GVLPDSKDGWVRLMPYKYSTWTDDDDEDDDEEEDSNDDDRDTDDDLYLPLSHFFGENSSA
KGFSKGKESEIVLVDKAARKRKMKMKMKMKKRDGTGGSRELSVIPFTPVFDPIPLEEFGF
NANSLWSGNLMDEMDRYRSKATSKYGKKKMLSEMDEMESDLGWVDNMSKSSVQKKTGSRS
RIRSGYGKTGHSDEPQIFKKRTLSAGAYNKLIESYMSNIDSTIAAKKETNSVVEQWEALK
NPTSTAMEGEDGSSEDEDDDSEGETSENEMLWREMELCMASSYILDDNELRVDNEAFQKA
TSGCEHDYELNEEIGMCCRLCGHVGSEIRDVSAPFARQKKWTTEAKHINEEDIIDTKVKQ
DGDESRSFTMPVASLEEVPSPDESENVWSLIPQLKRKLHMHQRKAFEFLWRNLAGSVIPS
MMDPSSDKIGGCVVSHTPGAGKTFLIIAFLASYLKIFPGKRPLVLAPKTTLYTWYKEFIK
WEIPVPVHLIHGRRTYCVAKEDKIQFKGIPKPSQDVSHVIDCLDKIQKWHAQPSVLVMGY
TSFLTLMREDSKFAHRKYMAKVLRESPGLLVLDEGHNPRSTKSRLRKALMKVDTDLRVLL
SGTLFQNNFCEYFNTLCLARPKFIHEVLMELDEKFNTNQTVQKAPHLIENRARKFFLDII
AKKIDTKVGDERLQGLNMLRNMTSGFIDNYEGSGSGSGDVLPGLQIYTLLMNSTDLQHKT
LNKLQTIMSTYPGYPLELELLITLAAIHPWLVKTSTCCAKFFNPEELFEIEKLKHDAKKG
SKVMFVLNLVFRVVKREKILIFCHNIAPIRLFLELFENVFRWKRGREILTLTGDLELFDR
GRVIDKFEEHGGPSRVLLASITACAEGISLTAASRVIMLDSEWNPSKTKQAIARAFRPGQ
QKVVYVYQLLSRGTLEEDKYRRTTWKEWVSSMIFSEEFVEDPSQWQAEKIEDDVLREIVE
EDKVKSFHMIMKNEKASTG
NT seq
3840 nt
NT seq
+upstream
nt +downstream
nt
atgaagagaaagcgttactatcagttgaaccatacctttgatccatgtcctttcgaggtg
ttcagttcagggacttggaaggccgtggagtacttaagagtcgagaggggatcgatgacc
atgcgacttttggagaaggggcatgtattggatgatgtaaaaccttttcaatggcttcgt
cttagatcaagaaaggccactactatcgactgcaccacttttctacggcacggtgttgat
gtttgtgttctctatcagaaagatgaagcgactccagaggatgaccaggacccggtttgg
gttgatgcaaagattgtatcaatagagaggaagcctcatgaacctgagtgcttgtgtgag
ttctacgtcagcatctatatagaccaaggctgcatcagttcggagaagcacaggatgaat
agagcttctgtgctcatgggactggaccaaatctccattctacaaaagtttcccaaggaa
caaagcgtggaccggttctacagatggagatactccgaggacagtgcttcgctggtgaaa
acaaggcttacactcggcaagttcatgtctgatctctcttggcttcttgttacatcagtc
ttgaaaagcacagtgttccatatcaaaacaatccaaaacaagatggtgtatctgattgtg
aatgatgaagaggagtctagtagtagttcttgtttgagtgcaatgaatataacggtggaa
gatggagtttacatgtcaaaggtggttacattcaatccagatgagagaaatggtactcct
gctctagattatgttcatgtagaggtggaggaggaaagtgaagaggaggaggaggaggag
gtgatggagctgcgtcgatccaagagaagaaacatgaggcctgaaagatatggtttctct
ggggttctgccagattcaaaggatggatgggtaaggctgatgccatataagtacagcaca
tggactgatgacgacgacgaagatgatgatgaagaagaagatagtaatgatgatgataga
gatacagatgatgatttgtacttacccttatcacacttctttggggaaaatagcagcgca
aaggggtttagtaagggtaaggaaagtgagattgttttggtagacaaagcagcgaggaag
aggaagatgaagatgaagatgaagatgaagaaaagagatggaactggtggaagccgcgag
ctctcagttattccctttactcctgtctttgaccctataccattggaagagtttggtttc
aatgcaaacagtttgtggagtggtaatttgatggatgagatggataggtatcgtagtaaa
gctacgtcaaaatatgggaagaagaagatgttgtctgaaatggatgagatggaatctgac
ttgggttgggttgacaacatgagcaagtcctcggtccaaaagaaaacaggatcacgctcc
cggataaggtctggttatgggaaaaccggacattctgatgaaccgcagatatttaagaag
agaacattgagcgcaggtgcttataacaagctgatagagtcatacatgagtaatattgac
tccacgattgcagccaagaaggaaacaaacagtgttgttgagcaatgggaagcgttaaag
aaccctacaagcactgcaatggaaggtgaagacgggtcgagtgaggatgaggatgatgat
agtgagggagagacgtcggagaatgagatgttatggagggagatggaactatgtatggct
tcttcttacattcttgatgacaatgagttgagagtggataacgaggcgttccagaaagca
acaagtggttgtgaacatgattatgaactgaatgaagaaataggaatgtgttgcagatta
tgtggtcatgtaggatcggagataagagatgtttctgcaccttttgcgagacaaaagaaa
tggaccacagaggctaagcacatcaacgaagaagacattattgacactaaggtgaaacaa
gatggagatgagagccgcagtttcactatgcctgtggcttccttagaagaggttccctcg
cctgatgaaagtgagaacgtttggtcactaataccacagctcaagagaaaacttcacatg
caccagagaaaagcctttgagtttctctggaggaacctagccgggtcagtgattccctcc
atgatggatccgagttcagataagataggtggctgcgtggtttctcacacccctggagca
ggcaagacgtttctcatcattgcttttcttgcaagctacttgaagatattccctgggaag
aggcctttggttcttgctcccaaaacaaccttgtacacatggtacaaggagttcatcaaa
tgggagattccagttcccgttcacttgatccatggccgtagaacctactgtgtagccaaa
gaggacaagattcagttcaaggggattccgaaaccgagccaagatgttagtcatgttatc
gactgtttagacaagattcagaagtggcatgcgcagcctagtgttcttgtaatgggttac
acttcgtttctaacactgatgagagaagattccaagtttgctcacagaaagtatatggct
aaagtacttagagagtctccagggcttctggttctagacgagggacacaaccctaggagt
accaagtcgagattgcgaaaggctttgatgaaagttgacactgacttgagggttctgctg
tctggtacactgtttcagaacaacttctgtgagtacttcaacactttgtgcttggctaga
cccaagtttatccatgaggttctaatggagttggacgagaagttcaataccaaccaaact
gtgcaaaaggcgcctcacttgatcgaaaacagagcgaggaagttcttccttgacatcata
gccaagaagattgacacaaaagttggagacgagcgcttgcaaggacttaacatgttgagg
aacatgaccagcggtttcatcgataactatgaaggaagtggaagcggaagtggtgatgtt
cttcctggtttgcagatctacacgttgttgatgaactccactgatttacagcacaagact
cttaacaaacttcagacgataatgtccacttaccctggttatcccctcgagttggagctt
ctcataaccttagcagctatccatccttggctggttaaaacctctacatgttgtgctaag
ttcttcaaccctgaggagctttttgagattgagaagctcaagcatgacgccaagaaagga
tccaaagtcatgtttgtgctgaacctcgtgtttagggtggttaagagggagaagattctc
atcttctgccacaacattgcgcccatccgcctgtttcttgagctgtttgagaatgtgttc
aggtggaagagagggagagagatccttaccttaacaggggatcttgagctgtttgacaga
ggcagagtgatagacaaattcgaagaacacggaggtccttctcgtgttctgctggcttcc
atcacagcttgtgcagaagggatcagtctaactgctgcttcaagggtgatcatgcttgac
tcggagtggaatccttccaagacaaagcaagcaatagcacgcgcgttcagaccaggacag
cagaaagtggtgtacgtctaccagctcttgtccagaggaacacttgaggaagacaaatac
aggaggacgacgtggaaagagtgggtctcaagtatgattttcagcgaagaatttgtagag
gacccgtcacagtggcaagctgaaaagattgaagatgatgttctcagagagatcgtagag
gaagacaaagtcaaatccttccatatgatcatgaagaacgagaaagcttcaactggttga
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integrated database retrieval system
