Raphanus sativus (radish): 108822245
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Entry
108822245 CDS
T06014
Name
(RefSeq) uncharacterized protein LOC108822245
KO
K12385
Niemann-Pick C1 protein
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03265 Virion - Ebolavirus, Lyssavirus and Morbillivirus
108822245
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
108822245
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
rsz02000
]
108822245
Transporters [BR:
rsz02000
]
Solute carrier family (SLC)
SLC65: NPC-type cholesterol transporter
108822245
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NPC1_N
Sterol-sensing
NPC1_MLD
Patched
Motif
Other DBs
NCBI-GeneID:
108822245
NCBI-ProteinID:
XP_018450777
UniProt:
A0A6J0KS66
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Position
8:complement(6471476..6479963)
Genome browser
AA seq
1286 aa
AA seq
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MAIPFKQLLTPLLLLQVISLSVLVSAELISSLNTHSAPSNNKHSNEYCAMYDICGQRSDG
KVLNCPYPSPSVKPDDLFSAKIQSLCPTITGNVCCTETQFDTLRSQVQQAVPFLVGCPAC
LRNFLNLFCELSCSPNQSLFINVTSIAQVGGNLTVDGIDYLTTDMFGEGLYESCKEVKFG
TMNTRAINFVGGGAQNFKEWFAFIGQKAPPGFPGSPYAINFKSSTPGLSAMAPMNVSTYS
CGDTSLGCSCGDCPSSPACSSPEPLPPPHQEDSCSFRIGPLKVRCIELSMALLYILLVSS
FFGWAAFSRTRDITQPDGSSESLVHLLEGDGINSELKKSTLGVKGKRHAHLSPVQRYMAT
FYKTYGSWIARNPSLVLIISVAVVLALSSGLLHFKVETRPEKLWVGPESKAAEEKKFFDS
HLSPFYRIEQLILATIPDPKTGRAPSIVTEENILLLFDIQEKVDQIRGNYSGSEVFLTDI
CLKPLGEDCATQSILQYFKMDAENYDEYGGIEHAEYCFQHYTSSELCLSAFQAPVDPSAV
LGGFSGSNYSEATAFVITYPVNNIVGDSSNENARAIAWEKSFIQLAKEELLSMVQSNNLT
LSFSSESSIEEELKRESTADVITIAASYLVMFVYISVTLGDAPQFSTFFISSKVLLGLSG
VVLVLLSVLGSVGFFSALGVKSTLIIMEVIPFLVLAVGVDNMCILVRAVKRQPRDISLED
RISSALVEVGPSITLASLSEVLAFAVGAFVPMPACRIFSMFAALAILLDFFLQITAFVAL
IVFDCRRAADNRIDCFPCVKVSSSSQESVEGGSEPGFLERYMKEVHAPVLGLWVVKMVVV
AVFLAFALASIALSPRLETGLEQKIVLPRDSYLQDYFDSLAEYLRVGPPLYFVVKDYNYS
LESRQTNQLCSISQCNSNSLLNEISRASQAPETSYIAKPAASWLDDFLVWLSPEAFGCCR
KFTNGSYCPPDDQPPCCTADEDICSLDGICKDCTTCFRHSDLVRDRPSTAQFREKLPWFL
NALPSADCAKGGHGAYTNSVDLKGYETGVIQASEFRTYHTPLNTQGDYVNSLRAAREFSS
RMSNLLKIDIFPYSVFYIFFEQYLNIWTVALSNLAIAIGAIFVVCLLITSSAWSSAIIVL
VLVMILADLMGVMVVLGIQLNAVSVVNLIMSIGIAVEFCVHISHAFLMSNGNREQRARQA
LETMGASVFSGITLTKLVGVMVLCFARSEIFVVYYFQMYLALVIIGFLHGLVFLPVILSL
AGPPQIHLDTEEEQQRRDEASSSLLN
NT seq
3861 nt
NT seq
+upstream
nt +downstream
nt
atggcgatccctttcaagcaactgcttacgcctcttctccttttacaggtgatcagtttg
tcagttttagtcagcgcagagctcatctcctcactcaacacccactctgctccaagtaat
aataaacattcaaatgagtactgcgctatgtatgacatttgtggacaacgctccgacggc
aaagtcctcaactgtccttatccttccccttccgttaagcctgatgatctgttttctgcc
aaaatacaaagtctctgcccaaccattactgggaatgtctgttgcactgagactcagttc
gacactttgaggtctcaagttcaacaggctgttccttttcttgtcggttgtcctgcatgc
ttaaggaatttcttgaacctcttctgcgagctctcctgctctcccaatcagtcccttttc
atcaatgtcacttccattgctcaggtgggtggaaatttgacagtggatggtatagattat
ctcactactgacatgtttggagaagggctttacgagtcttgtaaagaggtgaaatttgga
actatgaacactcgtgccatcaattttgttggtggtggcgctcaaaacttcaaagagtgg
tttgcgtttatcggtcagaaagcaccacctggcttccctggttcaccatatgcaatcaat
ttcaaatcaagtacccctgggttatctgcaatggcgccaatgaacgtatctacttattcg
tgtggcgacacatcacttggatgctcttgtggcgactgcccttcctcacccgcttgctca
agtcccgaaccccttcctccgccacatcaagaagattcctgctcattccgaatcggtcct
cttaaggttagatgcattgagttatcgatggcactgttatacatcctgctggtctctagc
ttctttggatgggctgctttcagtcgaacaagagatataacgcagcctgatggtagctca
gagtcactagtgcatctgttggaaggagatggaattaatagtgaactgaagaaaagcaca
cttggtgtcaaggggaaaagacatgctcacctctctcctgttcagagatacatggcaaca
ttttacaaaacatacgggtcatggattgctagaaatccatctcttgttcttatcatatcg
gtggctgtagttcttgcactcagttcaggtctcttacattttaaggtggaaacacggcca
gaaaagctgtgggtaggtcctgaaagcaaagcagcagaagagaaaaagttctttgatagc
cacctttcaccattctacagaatcgagcagcttatcttggccactattcctgatcccaaa
actgggagggctcctagtattgtgacagaagaaaatattcttttgctttttgacatacaa
gagaaggtcgatcaaattcgtggaaattattcaggttcagaggtctttctgactgacatc
tgcttgaagccgttgggggaggactgcgccactcagagtattctgcagtatttcaagatg
gatgctgaaaattatgatgagtatggaggaattgagcatgctgagtattgtttccagcat
tacacgtcatcagagttgtgtttgagcgcttttcaggcgcccgttgatcctagtgcagtg
ttgggaggattttcggggagtaactattctgaggctactgcgtttgttataacatatcca
gtcaacaatatcgttggtgattcgagcaacgagaacgcaagggcaatagcatgggaaaaa
tcgttcattcaattagcgaaggaggagctgctatctatggtgcaatccaataatttgact
ctctctttttcatccgaaagttcaatagaggaagagctgaaaagagaaagcactgctgat
gttataacaatagctgcaagctatctggttatgtttgtttatatttccgtcacacttgga
gatgctccgcagttttctactttcttcatttcatcaaaggtcttgctcggtctttcgggg
gttgtgcttgtcttgctttctgtacttggatctgttggatttttcagtgcccttggagtt
aaatccacattgatcataatggaagtcattcctttcctagtcctggcggtgggagtagat
aacatgtgcatattggttcgtgctgtaaagagacaaccccgtgatatttctttagaggac
cggatcagctctgcacttgttgaagtaggtccatccataacgttggcaagtttatccgaa
gtcttggcatttgctgttggagcttttgttccaatgcctgcatgtcgtatcttttcgatg
tttgcagctttggctattctactggacttctttctgcaaatcacagcatttgttgcgcta
atagtttttgactgcagaagagctgcagataacagaattgactgtttcccttgcgtaaaa
gtttcttcatcgtctcaagaatctgttgaaggtggaagtgaacctgggtttcttgagaga
tacatgaaggaggttcatgcacccgtacttggactttgggttgtaaaaatggttgttgtt
gctgtattcttggcttttgcgctggcaagcattgccctaagtccaaggctggaaactggt
ttggagcagaaaattgttcttcctagggactcttatcttcaagactatttcgacagtctc
gcagagtacctcagggtgggaccgcctttgtattttgtagtcaaggattacaattatagc
ttggaatcaaggcagacgaatcagttgtgctctatcagccagtgcaattcgaattccctt
ttaaatgagatatcaagagcatcacaagctccagaaacaagttacattgccaaaccagct
gcgtcttggctcgatgattttcttgtatggctatcaccagaggcttttggctgttgtcgg
aagttcactaatggcagttattgtcctccagatgatcagccaccctgctgcacagctgat
gaagatatatgcagtttagatgggatctgtaaagactgtaccacatgctttcgacactca
gatttggttcgggatcgcccatctacagctcagttcagggagaaactaccctggtttcta
aatgctttgccttcggctgactgtgcaaaaggtggtcatggagcttataccaatagcgtg
gatttgaaagggtatgagactggggttatacaggcatctgagttccgtacataccacact
ccacttaacacacaaggtgactatgttaattcactacgagctgcccgggagttcagttca
agaatgtctaatttgttgaagattgacatctttccatattctgtgttctacattttcttt
gagcaatatctgaatatctggaccgtagctttgtcaaacctggctatagcaatcggtgct
atatttgttgtttgcttattaatcacttccagtgcctggagttcagccatcattgttctt
gtgttagtgatgatactcgcggacctcatgggtgtaatggtggttttgggaattcaactc
aatgcagtttctgttgtgaatttgataatgtcaatcgggattgctgtagaattctgcgtg
cacatatcacatgccttcctgatgagtaatgggaacagagaacaaagagcgaggcaggca
ctggaaaccatgggagcttcggttttcagtgggatcacactcacaaaacttgttggagtg
atggtgctttgcttcgcacgatcggagatatttgtggtgtattactttcaaatgtacttg
gctttggttataatcggcttcttgcatgggctcgttttcttacctgtcatactaagttta
gctgggccaccacagatacacttggacacggaggaggagcagcagaggagagacgaagct
tcttcttccctattgaactga
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