Raphanus sativus (radish): 108822642
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Entry
108822642 CDS
T06014
Name
(RefSeq) DNA-directed RNA polymerase II subunit 2-like isoform X1
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03020
RNA polymerase
rsz03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108822642
09124 Replication and repair
03420 Nucleotide excision repair
108822642
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108822642
03400 DNA repair and recombination proteins [BR:
rsz03400
]
108822642
Enzymes [BR:
rsz01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108822642
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108822642
DNA repair and recombination proteins [BR:
rsz03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108822642
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
108822642
NCBI-ProteinID:
XP_018451274
UniProt:
A0A6J0KW10
LinkDB
All DBs
Position
8:11987614..11993917
Genome browser
AA seq
1182 aa
AA seq
DB search
MEYEQDQPHIDGDDEEITQEDAWTVISAYFDEKGLVRQQIDSFDQFIQNTMQEIVDESSD
IEIRSQSQHNPGHQSGFAETIHKIRFGQIYLSKPMITESDGEMATLFPKAARLRNLTYSA
PLCVDVSKRVIKKGHDGVEVTETQDFTQVFIGKVPIMLRSTYCTLNGNSEKDLTELGECP
YDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYLYVAEVRSMAENQNRPPSTMFV
RMFSGSKGGSSGQYIQCTLPYIKKEIPIIIVFRALGFVADKDILERICYDFGDTQMMELL
RPSLEEAFVIQSQQVALDYIGTRGAPHGAPRKKRIKYAIDILQKEMLPHEGVGESCESHK
AYAFGYIINRLLRCVLGRKPEDDRDHYGNKRLDLAGPLLGGLFRMLFRKLTRDVRSYVQK
CVDNGKDVNLLFAINAKTITSGLKYALATGNWGQANAAGTRAGVSQVLNRLTYASTLSHL
RRLNSPIGREGKLSKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYITVGSAASPIL
EILADWGTENLEESSPSVIPQATKIFVNGKWVGIHRDPDILVKTLRLLRRSNGSYTEVSV
VRDIRLKELRIYTDYGRCSRPLFIVDNQRLLIKKKDIYALQQRESAEEDGWHQLLAKGFI
EYVDTEEEETTMISMTINDLVQARLRPDEAYSDTYTHCEIHPSLILGVCASIIPFPDHNQ
SPRNTYQSAMGKQAMGIYVTNYQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPAGINA
IVAISCYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLIKEDFGRPDRGNTL
GMRHGSYEKLDDDGLAPPGTRVSGEDVIIGKTTPISQDEAQGQTARYTRRDHSISLRHSE
TGMVDQVLLTTNADGLKFVKVRVRSVRTPQIGDKFSSRHGQKGTVGMTYTQEDMPWTIEG
VTPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKALHKCGYQ
MRGFERMYNGHTGRPLPAMIFIGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPAEGRSRD
GGLRFGEMERDCMIAHGAASFLKERLFDQSDAYRVHVCETCGLIAIANLKKNILECKGCK
KTTDIVQVHVPYACKLLFQELMSMAIAPRMLTKDLKSAKGRK
NT seq
3549 nt
NT seq
+upstream
nt +downstream
nt
atggagtacgaacaggaccagcctcacattgatggcgacgacgaggagattacacaggag
gacgcatggaccgtcatctcagcctacttcgatgagaaaggtctcgttcgccagcagatc
gactcgttcgatcagtttattcagaacaccatgcaagagatcgtcgatgagtcgtctgat
atcgagatccgatctcagtcccagcacaatcctggccaccaatccggttttgccgagaca
atccacaagattaggtttggacagatttatctgagcaaaccaatgataacggagtctgat
ggagagatggccaccttgttccctaaggctgcaaggctgagaaacctcacctactcggct
cctttgtgtgtcgatgttagcaagagagttattaagaaagggcatgatggtgtggaagtt
acggagacacaggattttactcaagttttcattggaaaggttcccattatgctccgatct
acttactgtaccttaaatgggaattcggagaaagatttgacagagcttggagagtgtcct
tatgatcagggcggatacttcattattaatggcagtgaaaaggttctgattgctcaagag
aagatgagtacgaaccatgtttatgtgttcaagaagagacagccaaataagtatttgtat
gttgctgaagtccgttccatggcggaaaaccaaaatagacctccaagcacaatgttcgtg
cgtatgttctctggctccaaagggggttcatctggacagtatattcaatgtacacttcca
tatatcaagaaagaaattcctattatcatagtatttcgtgcattgggatttgttgccgat
aaggacatattggaacgtatatgctatgactttggcgatactcagatgatggagttgctc
aggccttccttggaagaagcttttgtcattcaaagtcagcaggttgcccttgactatatt
ggaacacgtggtgcacctcatggtgcacccaggaaaaagaggataaagtatgcgatagat
atccttcagaaagaaatgcttcctcatgaaggagttggggaatcttgtgagtcgcataaa
gcttacgcttttgggtatatcataaaccggctgctgcgttgtgtgcttggccgaaagcca
gaggatgatagggatcattatggtaacaaaagactggatcttgctggtcctttacttgga
gggctgtttagaatgcttttcagaaagcttacgagggatgtgagatcttatgttcagaag
tgcgttgacaatggcaaagatgtcaatcttctgtttgccattaacgctaaaacaattacc
tctggcttgaaatatgctcttgctactgggaactggggccaggcaaacgctgctggcaca
agagcaggagtctctcaggttctaaatcggttgacatatgcttccactttgtctcatttg
aggcgtctcaattctcctattgggcgtgaaggaaaattgtcaaaaccaagacaattgcac
aactcacagtggggtatgatgtgccctgctgaaacacctgaaggacaggcttgtggtcta
gtgaaaaacttggcgctcatggtctacattacagttgggtcagctgcttctcccattttg
gaaattttggcggattggggaactgagaatcttgaggaaagctctccatcagttataccc
caagctacaaaaatctttgtcaatggaaagtgggttggaattcatcgagatcctgacatt
ttggtgaaaacgttgagacttttgaggagaagcaatggtagttacactgaagttagcgtt
gttagagatattcgtctgaaagagctccggatatacactgattatggtcgctgtagtcgt
cccttgtttattgtggataatcagaggcttttgataaagaagaaagatatatatgctctg
caacaaagggaaagtgcagaagaagatggttggcatcaactgcttgcaaaggggtttata
gaatatgtagacacagaggaagaggagactactatgatatccatgactatcaatgatctg
gttcaagctaggctccgccccgacgaggcatattctgacacttacacacattgtgagatt
cacccttctttgatattgggcgtgtgtgcttcaatcataccatttcccgaccataatcag
tcaccccgtaatacatatcaatctgctatgggaaagcaagccatgggaatatatgtcacc
aactaccaattccgcatggataccttagcctatgttctatattatcctcaaaagcctctg
gtcaccacaagagctatggagcatcttcactttaggcaacttccagcaggaattaatgct
attgttgcaatttcttgctattctggatataatcaagaagattctgtcattatgaatcag
tcttcaatagatcgtggtttctttcgatccttgttcttccggtcttacagagacgaggag
aaaaaaatggggacccttatcaaagaagactttgggcgcccagacagaggaaatacactg
ggtatgcgacatggttcttatgagaaactggatgatgatggtctcgcacctcctggtact
agagtttcaggtgaagatgtaatcattgggaaaacaactccaatatctcaagacgaggct
caaggacaaacagcacgatacaccagacgtgatcacagtataagcttgcgtcatagtgaa
actggaatggttgatcaggttctattgactacaaatgcagatggtttgaagtttgtgaaa
gtgagggttagatcagttcgtactccgcaaattggagacaaattcagtagtagacatggt
cagaagggaactgttggcatgacgtacacacaggaggacatgccttggacgattgaaggc
gttactcctgatataattgtgaatccacatgctatcccgtctcggatgacgattggacag
ctaattgagtgcatcatgggaaaagtggcagctcacatgggtaaagaaggagacgcaact
ccctttacagatgtcacggtggacaatataagcaaagctctccataaatgtgggtaccag
atgcgtggatttgagaggatgtacaatggccacacgggcagaccactcccagcgatgata
ttcataggaccaacgtattaccaaaggttgaagcatatggttgatgacaagatccactct
cgtggacgaggtcctgtgcaaatcttaacaagacaaccggctgaaggaagatcacgtgac
ggtggattgcgttttggagaaatggaacgagactgcatgattgctcatggtgctgctagc
tttttgaaagagaggctgtttgatcagagcgatgcgtatagggtacatgtgtgtgaaaca
tgtggcctcatcgccattgcaaacctgaagaagaatattttggaatgcaaaggttgcaag
aagacaacagatattgttcaggttcacgttccatatgcttgtaaattactgtttcaagag
cttatgtcaatggcgattgcgccaaggatgcttactaaagacctgaaatcagctaaaggc
aggaagtga
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integrated database retrieval system
