Raphanus sativus (radish): 108822892
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Entry
108822892 CDS
T06014
Name
(RefSeq) AMSH-like ubiquitin thioesterase 1
KO
K11866
STAM-binding protein [EC:
3.4.19.12
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
108822892
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
rsz01002
]
108822892
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108822892
04121 Ubiquitin system [BR:
rsz04121
]
108822892
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
108822892
Peptidases and inhibitors [BR:
rsz01002
]
Metallo peptidases
Family M67
108822892
Membrane trafficking [BR:
rsz04131
]
Endosome - Lysosome transport
Others
Others
108822892
Ubiquitin system [BR:
rsz04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
JAMM
108822892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
JAB
USP8_dimer
Prok-JAB
Motif
Other DBs
NCBI-GeneID:
108822892
NCBI-ProteinID:
XP_018451595
UniProt:
A0A6J0KUK5
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All DBs
Position
8:complement(23822038..23825236)
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AA seq
511 aa
AA seq
DB search
MGSPSEIIDIATSARRIGVDNRISLKFYFRIADNILKQANIFRAEKNIIDLYVMLLRYSS
LALETIPSHRDYRTSLKSNKEYLRMRLLDVLAELEKLKPVVRQRIQELYPKPLPRYSVQT
LPPNGSQRWSSAVKPSLSSYDHAKVINPSVHSVGYMGSRGQQFLNVPPIEQRFRNMSVNL
IQPTEETLSKHSILGPTGLRAQWQPPKNDVKVQYPSNIDFSPVEIPSFRQQSVDSKPMIT
NGSSNEPEKPIVESSSTPSEKIQKNYTEELSSMISFEEEKECVNDNNNIIRQPSPPPVLA
EVQDLAHGLCHEANEVECKIDNSLPDESLRAESPLQLHIATTMMDAFMRLANSNTKKDLE
TCGILAGSLKNRKFYITALIIPKQESTSNSCQATNEEEIFEVQDKQSLFPLGWIHTHPTQ
SCFMSSIDVHTHYSYQIMLPEAVAIVMAPQDSSRKHGMFRLTTPGGMTVIRNCDQRGFHA
HSSPADGGPIYNTSTEVYMNPDLRFDVIDLR
NT seq
1536 nt
NT seq
+upstream
nt +downstream
nt
atgggatcgccttctgagatcatcgacatcgctactagtgctcggagaataggcgtggac
aatcgcatctccctcaaattctacttcagaatcgcagataacatcctcaaacaggccaac
atatttcgagctgagaagaatataattgacttatatgtcatgcttctgcgttactcgagc
ttggctctggagactataccttcccatcgtgattacagaacatctcttaaaagcaacaaa
gagtatttgagaatgagactattggatgtcttggctgagctggagaagttgaaaccagtt
gtacggcaacggatccaagaactctatcccaagcctttacctcggtatagtgtgcaaact
cttccaccaaatggttctcaacgctggtcttccgctgtaaaaccatcgttaagtagctat
gatcatgcaaaggtaataaatccttctgttcacagtgttggctacatgggttccaggggt
cagcaattcttgaacgttccaccaattgaacagcgtttccgaaatatgtcagtgaactta
atccaacctacagaagaaaccctttccaagcattctatcttgggtccaactggactccgt
gcacagtggcagcctccgaagaatgacgtaaaggttcagtatccaagcaatatagatttt
tcgcctgttgaaatcccaagcttccgacaacaatccgtggatagcaagcctatgataaca
aacggcagtagcaacgaacccgagaagccaattgtggaatcaagctctactccaagtgaa
aaaatccagaaaaattacacggaagaactttcttcaatgatttctttcgaagaagaaaag
gaatgcgttaatgataataataacatcattaggcagccttcaccacctccagtacttgca
gaagttcaagacttggctcatgggttatgtcatgaagctaatgaagtggaatgtaagata
gataactccttgccagatgagtctctacgggcggaatctcctcttcaactccatattgca
acgacaatgatggatgcctttatgaggcttgccaactcgaacaccaagaaggatttagag
acgtgtggtattcttgctggttcactaaaaaaccgaaagttctatatcacagctctcatc
ataccaaaacaagaatcaacatctaactcgtgtcaggccacaaacgaagaggagatattt
gaagtacaggacaagcaatcccttttcccacttggatggatccatacgcatccgacacag
tcttgtttcatgtcatccattgatgtccacacacactattcataccagattatgttacca
gaagctgtggcaatcgttatggcgcctcaagactcttcaaggaaacatggaatgttcagg
ctgacaacaccgggaggaatgacggtgattaggaattgtgaccagcgagggtttcacgca
cacagttcgccggcagacggaggaccaatttacaatacttctacggaagtttacatgaac
cctgatctcaggttcgatgtcattgatctcagatag
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