Raphanus sativus (radish): 108823071
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Entry
108823071 CDS
T06014
Name
(RefSeq) SWI/SNF complex subunit SWI3D
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108823071
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
rsz03021
]
108823071
03036 Chromosome and associated proteins [BR:
rsz03036
]
108823071
Transcription machinery [BR:
rsz03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108823071
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108823071
PBAF complex
108823071
GBAF(ncBAF) complex
108823071
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
108823071
NCBI-ProteinID:
XP_018451802
UniProt:
A0A6J0KV49
LinkDB
All DBs
Position
8:10909242..10913755
Genome browser
AA seq
945 aa
AA seq
DB search
MEEKRTVASAGDSPASEPSTTTTRRRLKRKANALGTSNSSSSKKRMLTREKAMLASFSPV
HNGPLTRARHAPPSNMAGVKSEVLSAAAVVVVGTDGEKMKEEEERNKGIREWEAKMEDEF
EAVRSRESNVHVVPNHCGWFTWGKIHSLEERSMPSFFNGKLEGRTPEVYREIRDWIMRKF
HSDPNTQIEVKDLTELEVGDSDAKQEVMEFLDYWGLINFHPFPSADASSTADVHDASGDK
ESLLNSLYRFQADEASPAIVHKPRLTAQATTPSGLFPDPVAPDDLLKQEGPAVEYHCNSC
SADCSRKRYHCPTQADYDLCTECFDSGKFSSDMSSSDFILMDSAEAPGVGSGRWTDQENL
LLLEGLEIFKENWSEIAEHVATKTKAQCMLHFLQMPIEDAFLDQIDYKDPSTKDSTDVAV
SKDDKSVLKDAPEETENKNPVNEVETVKEAPETEDENEGKVPQGSSKPEDASEKTNEVEA
EEKTPNVETVTDESCKDEADENVALKALTEAFEELGYPITPEASLSFAELGNPVMGLAAF
LVRLAGSDVATASARASIKSLKSNSGLLLATRHCFVLEDPPDNKKHLTESKSVDAVGNDD
NDEQTKEKSQKAEDASLNSDDREMTDADPGKENQDSVSEEKQPGSRTENSARKPDSEGRK
ISSNSVATENSEEPTDKMCTSQEKCSGKELQVPLKDGNKLSSENKDASQASASQSVADGS
QPEASKDVEMKDISQSEKVEKDVPSIPDTSIAQQPTVRAFVPENGTDGENPNKEKDVCEG
TKDKHNKLKRAAVSALSAAAVKAKHLAKQEENHIRQLSGSLIEKQLRKLEAKLSIFNDAE
SLTVRVKEKLERSRQRLYHERAQIIAARLGAPPTMSSRTSLPTNRTAANFANVAQRPPMG
MSFPRPTMPRPPGASPFSVPGSLVAATAVTGSSGPPPGSDNVSSV
NT seq
2838 nt
NT seq
+upstream
nt +downstream
nt
atggaggagaaacgaaccgtagcttcagctggagattctccggcatctgagccgtcgacg
acgacgacgcggcggcgtttgaaacgcaaagcgaacgctctcggcacatccaattcctct
tcttcgaagaagcggatgttgacgcgcgagaaggcgatgctcgcgtccttctctcctgtc
cacaacgggcctctgactcgagctcgacatgcgcctccaagcaacatggctggggtgaag
tcggaggtgttgagtgccgccgcggtggtggtggtgggtacggatggtgagaagatgaag
gaggaggaagagaggaacaaagggatccgtgagtgggaggcgaagatggaagatgagttc
gaagcggttagatctcgggagagtaatgttcatgtggtgcctaatcattgcggttggttt
acatggggaaaaattcactcgcttgaagagcgctcaatgccctctttctttaacggcaag
ttggagggtcgcactcctgaggtatatagggaaatacgggattggatcatgaggaagttt
cattccgatccgaacacacagatagaagtaaaagatttaacagaactcgaggttggagac
tcggacgcaaagcaagaggtgatggagttcttggactactggggcttaatcaattttcac
ccattcccatcagcagatgctagttctactgctgatgttcatgatgcttctggggataaa
gagtctctgcttaacagtctatatcggtttcaagcagatgaggcttcccctgctattgtt
cacaagcctcgtctcacagcacaagctactacgccatcagggttgttcccagatccggtg
gcgcctgatgatttgctgaagcaagagggtccagcggttgaatatcactgcaactcctgt
tcagctgattgctctcgcaagcgctaccactgcccgacacaggcggattatgacttgtgt
acggaatgttttgacagtggcaagttcagctcagatatgtcatcttccgactttatacta
atggattctgctgaagctcctggagttggtagtgggaggtggactgatcaagagaacctt
cttctccttgaaggtttagaaatcttcaaggaaaattggagtgagattgcagagcatgtt
gctacaaaaacaaaagctcagtgtatgcttcattttcttcaaatgccaatcgaggatgca
tttcttgatcaaattgactacaaagatccgagtacaaaagacagtacagatgtagctgtg
tctaaagatgataaatctgtcctaaaagatgcacctgaagagacagagaataagaatcct
gttaatgaagttgaaactgtgaaggaagctccagaaacagaagatgaaaatgaaggaaaa
gttcctcagggatcttcgaagcctgaggacgcgagtgaaaaaactaacgaagtggaagcc
gaagagaaaacgcctaacgtagaaaccgtcactgatgagagttgtaaagatgaggctgat
gaaaacgttgctttgaaagctctgactgaagcttttgaagagcttggttatcctatcaca
cccgaagcctctttatcctttgcggaattaggaaatcctgtcatgggactggcagctttt
ctggtgagattggcgggatctgacgttgctactgcttcagcccgggcttccataaaatct
cttaagagtaattctggattgctgcttgccacaagacattgttttgttctcgaggatcca
ccagacaacaagaagcatttaactgaatcaaaaagtgtggatgcagtggggaacgatgat
aacgatgagcagacaaaagaaaaaagccagaaagcagaagatgcctccttgaattcagat
gatagggaaatgacagatgctgatccaggcaaagaaaatcaggattcagtctctgaagaa
aagcaacctggttcccgaactgaaaattctgctagaaaaccagattctgaaggacgaaaa
atatctagtaattcagtggcaactgaaaactcggaggaaccaacggataaaatgtgtact
tcccaggaaaaatgttcaggaaaagagctccaggtgcctttaaaggatgggaataagctt
tctagtgaaaataaagacgcttctcaagcaagtgcctcccagtcagttgcagatggttct
cagccagaagcatcaaaagatgtagagatgaaggatatatcacagtcagagaaggttgaa
aaggatgttcctagtataccagacacgtctattgcacagcagcccactgtaagggccttt
gtaccggaaaatggaacagatggtgaaaatccaaataaagagaaggatgtctgtgaaggg
acaaaagacaaacataacaaacttaagcgcgcagctgtctctgctctctcagctgcagcg
gtaaaggcaaagcatcttgcaaagcaagaagaaaaccacatccgacaactttctggatca
ttgatagagaagcagttgcgtaaactagaagcaaaattatctatattcaacgacgctgaa
agcttgacagtaagggtaaaagagaaattggagaggtcaaggcaacggctataccatgaa
agggcacagatcatagcagctcgacttggtgccccacctacaatgtcttcaagaacatca
ttaccaacaaacagaaccgctgcaaatttcgctaatgttgcccaaagacctcccatgggt
atgtcctttccacgcccaacaatgccaaggcctccaggtgcatcaccattctccgttccg
ggttcacttgtagccgcaacagcagtaaccggaagctcgggtccacctccaggttcggac
aatgtttcttcggtttag
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