Raphanus sativus (radish): 108823140
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Entry
108823140 CDS
T06014
Name
(RefSeq) WD repeat-containing protein PCN-like
KO
K14548
U3 small nucleolar RNA-associated protein 4
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108823140
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rsz03009
]
108823140
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
108823140
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40
Beta-prop_WDR90_POC16_2nd
WDR55
Beta-prop_TEP1_2nd
WD40_Prp19
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_EML
EIF3I
Beta-prop_IFT140_1st
WD40_MABP1-WDR62_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_NUP159_NUP214
Beta-prop_SCAP
SdiA-regulated
Beta-prop_IFT122_1st
Motif
Other DBs
NCBI-GeneID:
108823140
NCBI-ProteinID:
XP_018451915
UniProt:
A0A6J0KVG7
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Position
8:complement(5291102..5295197)
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AA seq
796 aa
AA seq
DB search
MFEYRCNSINWKPSPLVSLATSADGSRVAAAREDGSLELWLVSPGSLSWHSQLIIHGDPK
SRISHLAWVGAMLFSSSIDGTVSEWDLFDLKQKVVLDSIGVSIWQMAVAPPSAAEPEGTV
KNGYLSEKSDDDEGESGVEDDDSEFEEKSEEVRDRRLAVACDDGCVRMYYVSESDKLTYF
RSLPRVSGRVLSVTWSLDAQRIFSGSSDGLIRCWDANLCHEVYRITVGLGGLGNGSELCI
WSLLSLRCGVLVSGDSTGSVQFWDSQHGTLLQSHSNHKGDVNALAAAPSHNRVFSAGADG
QVILYKLAGGTFKSQDSKPSSTKKWDYIGCVRSHTHDIRALTVAVPISSEGSLPDGNAKG
KSRKQRRKEKPGAISYHKWADVGVPVLISAGDDAKLFAYSVQEFTKFHPHDICPAPQRVP
MQMVHNTVFNQTSLLLVQDSCSLDILGIHISSDSSGRVSTKPLVRVKSKGGRKIICSAIS
NAGSLFAYSDQIRPSLFELKKNKLGKNPWSPNRKRLPNLPSAHSVVFSRDCSRLIIAGHD
GKIYTVGTDSMELLHTLTPRQEAQEGESPPREPPITKLYTSSDDHWLAAINCFGDVYVFN
LETQRQHWFISRLDGASVAAAGFHPRDNNVLVISTSSNQVFALDVEARELGKWSLLQTLC
LPKRYQEIPGEVLGLSFSPSPSSSSVIIYSSRAKCLIEFGKPMEQGEEMDLSERVEDRVA
DIGLKKLGNGTRRKRRFEEYQKESKRNEREEVETSKHPVLYLKHLSKNAILVVEKPWMEV
IKSLDSQPVHRHIYGT
NT seq
2391 nt
NT seq
+upstream
nt +downstream
nt
atgtttgaataccgttgcaactccatcaattggaagccatctccgttagtatccctcgct
accagcgccgacggctctcgagtcgccgcagctcgcgaagacggttctctcgagctctgg
ctcgtctcccctggctctctctcctggcactctcaactcatcatccatggagatccaaaa
tcgagaatctcgcaccttgcctgggtaggtgccatgttgttttcttcgagcatcgatggc
acagtctcagagtgggatcttttcgacctgaagcagaaggttgtgttagactcaatcgga
gtatcgatctggcaaatggctgtagcacctccctccgctgctgaaccagaaggtacggtg
aagaatggatacttgagtgagaaatcagatgacgacgagggagaaagtggggttgaagat
gatgattctgagttcgaggagaaatcagaagaggtccgtgataggcgtcttgcagttgcg
tgtgatgatggctgcgtgaggatgtattatgtatctgaatcagacaagttaacttacttt
agatcgttgcctcgtgtcagtggccgtgttttaagtgtgacgtggagtctggatgctcag
agaattttctcgggcagtagtgatgggctgataagatgctgggatgctaacctctgtcat
gaggtatatagaattacagttggacttggaggactggggaacgggtctgagctctgtatt
tggtctcttctttcgttgagatgtggagttcttgtcagcggagatagtacaggaagtgtt
cagttttgggatagccagcatggaacccttttgcagtcgcactccaatcacaagggtgat
gtcaatgctcttgcagctgcccctagtcataaccgtgtgttttctgctggtgccgatgga
caggttattctatataagctcgctggtggtacatttaaatcacaagattcgaaaccttct
tccactaagaagtgggattacatcggttgtgtaaggtctcatactcatgacatcagagct
ctaactgtcgcagtgccaattagttcagaaggttctcttccagacggtaatgcaaaagga
aaaagtcgtaaacagcgcagaaaggagaagccgggtgctatcagttaccataaatgggca
gatgtgggggttccagtgctcatttcagcgggtgatgatgcaaagctttttgcatactca
gttcaagagttcactaagttccatccacatgatatatgccctgcgcctcagagagtacct
atgcagatggtacataatacagtgttcaatcagacttctcttctcttggttcaggattct
tgttctttagacattcttggtattcacataagcagtgattctagtgggcgtgtctccacc
aagccattagttcgggttaaaagtaaaggtggtagaaagatcatatgcagtgcaatttct
aacgcaggatcgctttttgcttattctgaccaaattcgcccaagtctgtttgagttgaag
aaaaataaacttggaaagaacccatggagtcccaacagaaagcgacttcccaatcttcca
tctgcacattccgtggtcttcagccgtgactgctctcggctgataatagctgggcacgat
ggaaagatatataccgttgggactgatagcatggagctattacacacccttactccacgt
caggaggcgcaggaaggtgaatctcctcctcgtgaacctccaattacaaaactgtacact
agctcagatgatcattggctagctgctattaattgctttggggacgtatacgtgttcaac
ctggaaacacagaggcagcattggttcatatcaaggcttgatggtgcatcggttgcagcc
gctggtttccatcccagggataacaatgtgcttgtgatctccacctcttcaaaccaggtg
tttgcattggacgtggaggctagagagttgggcaagtggtcacttcttcagactctttgc
ttgccaaagagataccaagagattcctggtgaggtcctagggctttcattctctccatcg
ccaagctcatcatctgttatcatctacagctccagagcaaagtgtctaattgagttcggg
aagccgatggaacaaggcgaagagatggatttgtctgaaagggtagaagatagagttgca
gacattggtttgaagaaattggggaatggaacccggcgaaaacgtaggttcgaggagtat
caaaaagagagtaagaggaatgagcgagaggaggtcgaaacttcaaagcacccggttctg
tatttaaaacatctatcaaagaatgcaatcttggtggtagagaaaccatggatggaagtt
atcaagagtttagattcacagccagttcaccgacatatatatgggacataa
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