KEGG   Raphanus sativus (radish): 108823742
Entry
108823742         CDS       T06014                                 
Name
(RefSeq) histone-binding protein MSI1
  KO
K10752  histone-binding protein RBBP4
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03082  ATP-dependent chromatin remodeling
rsz03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    108823742
   03083 Polycomb repressive complex
    108823742
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rsz03036]
    108823742
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Nucleosome assembly factors
   Histone chaperones
    CAF-1
     108823742
  Histone modification proteins
   HAT complexes
    HATB complex
     108823742
   HDAC complexes
    Sin3A-HDAC complex
     108823742
   Polycomb repressive complex (PRC) and associated proteins
    PRC2.1
     108823742
    PRC2.2
     108823742
  Centromeric chromatin formation proteins
   Kinetochore proteins
    MIS16-MIS18 complex
     108823742
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    108823742
  Chromatin remodeling factors
   NuRD complex
    108823742
   NuRF complex
    108823742
   NuRF complex (fruit fly)
    108823742
SSDB
Motif
Pfam: WD40 CAF1C_H4-bd WD40_CDC20-Fz Beta-prop_EIPR1 WD40_Prp19 Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 Beta-prop_EML_2 WDR55 WD40_WDHD1_1st Beta-prop_TEP1_2nd Beta-prop_EML Beta-prop_WDR75_1st Beta-prop_WDR90_POC16_2nd EIF3I WD40_RFWD3 ANAPC4_WD40 WD40_MABP1-WDR62_2nd eIF2A Beta-prop_RIG_1st NBCH_WD40 MIOS_WD40 WD40_MABP1-WDR62_1st Beta-prop_SCAP Beta-prop_NUP159_NUP214 Beta-prop_DCAF4
Other DBs
NCBI-GeneID: 108823742
NCBI-ProteinID: XP_018452522
UniProt: A0A6J0KX87
LinkDB
Position
9:complement(6444997..6446990)
AA seq 428 aa
MAKDDVEMRGEVEERIINEGYKIWKKNTPFLYDLVITHALEWPSLTVEWLPVRDEPPGQN
YSVQKMILGTHTSDNEANYLMIAQAQLPLDDTESEARQYDDDRSEFGGFGCASGKVQVIQ
QIVHDGEVNRARYMPQNPFLIATKTVSAEVYLFDYSKHPSKPALDGVCNPDLRLKGHSSE
GYGLSWSKFKEGHLLSGADDAQICLWDVSGTPKSAVLDAHRIFKAHEGVVEDVAWHMQHD
HLFGSVGDDHYLHIWDLRSASTSQPVKSVEAHSMEVNCLAFNPLNEWIVATGSTDTTVKL
FDLRKLNIPLHTFDSHREEVFQVGWNPNNETILASCCLGRRLLVWDVSRINEEQTAEDAE
DGPPELLFIHGGHTSKVSDFSWNPCDDWVVSSVSEDNILQIWQMAENIYHDEDHHDGPGT
GEEPTIGS
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcgaaagacgacgtcgagatgcgaggggaggtggaggagcgtataatcaacgaaggc
tacaagatctggaagaagaacactcctttcctatacgacctcgtcatcactcacgctctc
gagtggccttccctcaccgtcgaatggctccccgtccgcgacgagccccccggtcaaaac
tactccgtccagaagatgatcctcggcacccacacttccgataacgaagccaattacctc
atgatagcccaggcccagcttcccctcgacgacaccgagagcgaggcgcgtcaatacgac
gacgatcgctccgagttcggtggctttggctgcgcctccggaaaggtgcaagttatccag
cagatagttcacgatggtgaggtgaatcgagctcgatacatgcctcagaaccctttcttg
attgccaccaagacggttagtgcggaggtgtatctgttcgattacagcaagcacccttct
aagccagcgcttgatggggtttgcaatcctgatttgaggctcaagggtcacagctctgaa
gggtatggcctctcttggagtaagttcaaggaaggccatttgctcagcggcgctgatgac
gctcagatctgcttgtgggatgttagcggtactccgaaaagtgcggttcttgatgctcat
cggatcttcaaggctcatgaaggcgttgtggaagatgttgcatggcatatgcaacatgat
cacctgtttggatccgttggtgatgatcattaccttcatatatgggatcttcgttctgca
tctaccagtcaaccggtgaagtctgtggaagctcactccatggaggttaactgcttagcc
ttcaatccattgaatgagtggatcgtggcaacagggtcaactgatacgactgttaaatta
ttcgatctaaggaagctaaacatccctcttcacacatttgatagccatagggaagaggtt
ttccaagttggctggaacccaaacaacgagaccatcttagcctcatgttgccttggtaga
aggcttttggtttgggacgtcagcaggatcaacgaggaacagacagcagaggacgcagag
gacggcccaccggagctgctgtttatccatggtggtcacaccagcaaagtttcagatttc
tcgtggaacccttgtgacgattgggttgtatccagtgtatctgaagacaacatactccaa
atatggcaaatggctgagaacatttatcatgacgaggaccatcatgatggtccaggtaca
ggggaagaaccaacaataggttcttag

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