KEGG   Raphanus sativus (radish): 108824026
Entry
108824026         CDS       T06014                                 
Name
(RefSeq) protein SEH1
  KO
K14299  nucleoporin SEH1
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03013  Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09122 Translation
   03013 Nucleocytoplasmic transport
    108824026
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108824026
   04131 Membrane trafficking [BR:rsz04131]
    108824026
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Nuclear pore complex
     108824026
Membrane trafficking [BR:rsz04131]
 Autophagy
  Other autophagy associated proteins
   SEACAT/GATOR2 complex
    108824026
SSDB
Motif
Pfam: WD40 WD40_CDC20-Fz WD40_WDHD1_1st ANAPC4_WD40 Beta-prop_EML_2 WD40_Prp19 Beta-prop_TEP1_2nd EIF3I Beta-prop_RIG_2nd Beta-prop_CAF1B_HIR1 WDR90_beta-prop_4th Beta-prop_WDR19_1st Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_NUP159_NUP214 WD40_MABP1-WDR62_2nd PmrD
Other DBs
NCBI-GeneID: 108824026
NCBI-ProteinID: XP_018452858
UniProt: A0A6J0KZ68 A0A9W3CFW8
LinkDB
Position
9:28043658..28045418
AA seq 328 aa
MAAKSMATLDSGTTCSSWNYSGHRLAAGSIDGTLSVYDSPVPSSSSSFTSSSKVRVSESS
LVKILWLPSEYGDAVACICEDGSLSIWEEVSQDTHALEWKLRKSMMNKSTQVLDVQFGVS
KKSLKMVAAYSDGYIRVFELLNPLELKNWQLQAEFQNVIDSLSALGKPSTLSASVSWNPM
RSGEQEPSFVLAFNSDSPHLNSSKIWEFDEAHNRWLAVAELASPEDKGDPVYAVSWAPNI
GRPYEVVAVATHKGIGIWQVGLAPDLDGRLPVKKAASLSGHQGEVWQMEWDMSGMTLATT
GSDGMVRLWQSNLNGEWHEQAMLEPVPS
NT seq 987 nt   +upstreamnt  +downstreamnt
atggcggcgaaatcgatggcgacgcttgattctggcacaacctgctcctcatggaactac
tccggccaccgattagccgccggatccatagacggaaccctctccgtttacgactctccc
gttccatcttcctcttcttctttcactagcagttccaaagttagggttagcgaatcgagt
cttgtaaagatcctctggcttccttcggaatacggcgatgcagtcgcctgcatttgcgaa
gacggcagcttatcaatttgggaggaggtctctcaagacacgcatgctcttgagtggaaa
ctgcgtaagagcatgatgaacaagtctacccaagtgcttgatgttcagtttggggtctcc
aaaaagagtctaaagatggttgcagcatattcagatgggtacattagggtctttgagcta
ttgaatccattggaactgaaaaactggcaacttcaggctgagtttcagaatgttattgat
tctctgtcggctctgggcaaaccatcaaccctgtctgcatctgtttcttggaatccaatg
aggagtggggagcaagaacccagctttgttttagctttcaactctgattctcctcatctt
aattcttccaagatctgggagtttgacgaagctcataacagatggttggctgtagcagaa
ttagcctcaccagaagacaaaggtgatccagtttatgctgtctcgtgggccccaaatatt
ggccgaccatacgaggttgttgctgttgcaactcataaaggcatagggatatggcaagtt
ggtctggctcctgaccttgatggaaggcttcctgtaaagaaggccgcctcgctttctggt
catcaaggcgaggtttggcagatggaatgggacatgagtggcatgactttagctaccact
ggaagcgatgggatggtcagattgtggcagtccaacttaaatggtgagtggcacgaacag
gccatgctcgaaccagtcccctcctga

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