Raphanus sativus (radish): 108824583
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Entry
108824583 CDS
T06014
Name
(RefSeq) LOW QUALITY PROTEIN: protein GAMETOPHYTE DEFECTIVE 1
KO
K03539
ribonuclease P/MRP protein subunit RPP1 [EC:
3.1.26.5
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108824583
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
rsz03009
]
108824583
03016 Transfer RNA biogenesis [BR:
rsz03016
]
108824583
03029 Mitochondrial biogenesis [BR:
rsz03029
]
108824583
Enzymes [BR:
rsz01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.5 ribonuclease P
108824583
Ribosome biogenesis [BR:
rsz03009
]
Eukaryotic type
Pre-60S particles
RNases
RNase MRP
108824583
Transfer RNA biogenesis [BR:
rsz03016
]
Eukaryotic type
5'processing factors
Ribonucrease P
108824583
Mitochondrial biogenesis [BR:
rsz03029
]
Mitochondrial DNA transcription, translation, and replication factors
Mitochondrial transcription and translation factors
RNase MRP
108824583
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_P_p30
Motif
Other DBs
NCBI-GeneID:
108824583
NCBI-ProteinID:
XP_056849795
UniProt:
A0A9W3CE58
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Position
9:complement(5576884..5578339)
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AA seq
592 aa
AA seq
DB search
MELGYVGIAHNHSIEAASMSDKDSCAIPLLTLGSLVKAAPRLSSSVAFHRDSLGVPRSTP
FRQYTRVTVRLESKAQCLGLNSGNPVLKSYDIVAVRPVNQYAFDQACTKAEVDVISIDFS
NLQFRLMHPSVKAAVKRGVYFEIKYSLLLSDAEKRRQVISNAKLLVDWTKGKNLIISSGA
PSEYKGPPSVTELRGPNDVVNLMSLLGLSSERAKAAISVNCRNMIAKILKKKRFHKEAVR
VELLSSSXTFSLEQXLSGDCMKWDPLSSGEGDMLLEDLAKAFEATTRAVAHKPSKAFDFT
SDRNGLPSHGFRISNILGAESLTQPPAPKMIDAPVQCMADSASCDDKLXDDDKVEPATNV
PLSSEGHGLLVQDEAAASVTLIRCTVSDHAASDVNMQTELDSEDKQCRHQKAVTDPTKSC
ENLNMETSGGADDEVPVDGVRAVSGHAIIEQLTSIDGDEMKIDGSLEANHDEYMEVTVEE
DQKHETGDNNIILPNLSSSETTELLSEQSNSLSPEAVGQEHDQVSRLESSEDNRETETDQ
QAHVKSSEINNARSSGKVRGKRSWVRSTQLQPLKPFLLQRFKRISKRKHRRS
NT seq
1779 nt
NT seq
+upstream
nt +downstream
nt
atggagctcggctacgtcgggatcgcacacaaccactcgatcgaagccgcttcaatgtcc
gacaaagactcctgcgcgatccctctcctcaccctcggatctctcgtcaaggccgccccg
cggctctcttcctccgtcgcgttccaccgcgactcgctcggcgtccctcggtccactccg
tttcgccagtacactcgcgtcaccgtgaggctcgagagcaaggctcagtgcctggggctg
aactcggggaacccggtgctgaagagctacgatatcgtcgcggttaggccggtgaatcag
tacgcgttcgatcaagcttgtacgaaagctgaggttgatgtgatctcgatcgatttctcg
aatctgcagtttcggttgatgcatccttcggttaaagctgctgttaagcgtggggtttac
tttgagatcaagtactctcttcttttaagcgatgctgagaagaggagacaagttatatcc
aatgctaagttactggtggattggactaaggggaagaatctgattatatcgagtggtgct
ccttcagaatataaaggtcctccttctgtcacggaacttagaggtcctaacgatgttgtt
aacctcatgtccttgcttggactctctagtgagagagccaaagctgcaatttcagttaac
tgtaggaatatgatagccaagattttgaagaagaagcggtttcacaaagaagcagtcagg
gttgagttgctttcttctagtngaacgtttagtctcgagcagnctctgtctggagattgt
atgaagtgggatcccctctcgagcggcgaaggtgacatgctcttggaagatctcgctaag
gcttttgaagccaccacacgtgccgtggcgcacaaaccgtccaaggcgtttgatttcacc
tctgatcgtaatggcttgccttcgcatggtttcaggatcagtaatattctaggggcggaa
tctttgactcagccacctgcgcctaagatgattgacgcaccggtgcagtgtatggctgat
tcagcttcatgtgatgataaattanaggatgacgacaaagtggaacctgcaacgaacgtc
cccctgtccagcgagggacatgggcttttggtgcaggatgaagcagctgcatcggttaca
ctgataagatgtacagtctcagatcatgcagcttctgatgttaacatgcagaccgagttg
gattctgaagataaacaatgtcgccaccagaaagcggtcacggatccaacaaagtcctgt
gaaaatttaaacatggaaactagtggtggtgctgatgatgaagtcccagtggacggagtc
agagctgtttctggtcatgctattattgagcaacttacatccattgatggtgatgagatg
aaaatcgatggctctttggaagcaaatcacgacgagtacatggaggtgacagtggaagaa
gaccagaagcatgaaacaggtgacaataatattattcttcctaacttatcctcctctgag
actaccgaattgctaagtgaacagagtaactctctcagtccagaggcggttggacaagag
catgaccaagtatcaaggttagagtccagtgaggacaacagggaaaccgaaactgatcag
caagcccatgtcaagtcctctgaaataaacaatgccagaagctcaggtaaggtacgaggg
aagaggagttgggttagatcgacacaactacaacctttgaagccttttctactacaacgt
ttcaaacgaatcagtaaaagaaaacatagaaggagttga
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