KEGG   Raphanus sativus (radish): 108825711
Entry
108825711         CDS       T06014                                 
Name
(RefSeq) sm-like protein LSM7
  KO
K12626  U6 snRNA-associated Sm-like protein LSm7
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03018  RNA degradation
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108825711
  09123 Folding, sorting and degradation
   03018 RNA degradation
    108825711
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:rsz03019]
    108825711
   03041 Spliceosome [BR:rsz03041]
    108825711
Messenger RNA biogenesis [BR:rsz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     108825711
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     108825711
Spliceosome [BR:rsz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    108825711
SSDB
Motif
Pfam: LSM Hfq RimP_C
Other DBs
NCBI-GeneID: 108825711
NCBI-ProteinID: XP_018454556
UniProt: A0A6J0L4Q0
LinkDB
Position
9:complement(32582785..32584331)
AA seq 99 aa
MSGRKETVLDLAKFVDKGVQVKLTGGRQVTGTLKGYDQLLNLVLDGAVESVRDHDDPLKT
TDQTRPLGLIVCRGTAVMLVSPTDGTEEIANPFVQPEAV
NT seq 300 nt   +upstreamnt  +downstreamnt
atgtcaggaagaaaggaaacagtgttagatttggctaagtttgtggataaaggtgtgcaa
gttaagctcaccggtggtagacaagtcactggaactctcaagggatatgatcagttgctc
aaccttgttctggacggagcagttgagtctgtgcgagatcatgatgatcctttgaagact
accgatcaaacaagacctcttggtttaattgtttgtcgtggaactgcggtgatgcttgtc
tcaccaacggatggcactgaagaaatcgctaacccgtttgttcaaccagaagctgtctaa

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