Raphanus sativus (radish): 108826171
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Entry
108826171 CDS
T06014
Name
(RefSeq) transcription factor SPEECHLESS
KO
K20558
transcription factor SPEECHLESS
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz04016
MAPK signaling pathway - plant
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09130 Environmental Information Processing
09132 Signal transduction
04016 MAPK signaling pathway - plant
108826171
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
rsz03000
]
108826171
Transcription factors [BR:
rsz03000
]
Eukaryotic type
Basic helix-loop-helix (bHLH)
HLH domain only
108826171
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Motif
Pfam:
HLH
bHLH-TF_ACT-like_plant
CDC45
DUF5427
Pox_Ag35
Motif
Other DBs
NCBI-GeneID:
108826171
NCBI-ProteinID:
XP_018455056
UniProt:
A0A6J0L665
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Position
9:10292810..10296089
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AA seq
355 aa
AA seq
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MQESIPDFLEECEFVDTSLAGDDLFAILESLEGAGEISPMAASTPKDGTTSSKELVKNQN
YETSSPKKKRKRLETGKEEEEEEDEEDEDGEGEEEDNKQDGQQKMSHVNVERNRRKQMNE
HLTVLRSLMPCFYVKRGDQASIIGGVVEYISELQQVLQSLEAKKQRKTYAEVLSPRLVPS
PRPSPPVLSPRKPPLSPRISHHHLLLPPISPRTPLPTSPYGTHPPQLPLIPQPPRSYSLG
DLPPYSPASSSSSPSVSSNHESSLINELVANSKSALADVEVKFSGANVLLNTVSHKIPGQ
LMKIIAALEDLALEILQVNINTVEETMLNSFTIKIGIECQLSAEELAQQIQQTFC
NT seq
1068 nt
NT seq
+upstream
nt +downstream
nt
atgcaggagtcaataccggattttcttgaagaatgtgaatttgtggacacttcactagcc
ggagatgatctgtttgctatcttagagagtcttgaaggcgctggagagatatctcccatg
gctgcatctacacctaaagatggaaccacaagttccaaagagttagtaaagaatcaaaac
tatgaaacttcatctcctaaaaagaagaggaaaagactagaaactgggaaagaagaagaa
gaagaagaagatgaagaagacgaggatggagaaggagaagaagaagacaataagcaagat
gggcaacaaaagatgtctcatgtaaacgtggaacgtaataggagaaagcaaatgaacgag
catttgaccgttttacgttctcttatgccttgtttctacgtcaaacggggggaccaagca
tcgattataggtggagttgtggaatacataagcgagctacagcaagttcttcaatcttta
gaagccaagaaacaacgtaagacctacgcggaagtcctgagcccgagactagtcccaagc
cctcgtccttcaccgcctgttctaagcccacgaaaaccgcctcttagccctcgtatcagc
caccatcatctccttctccctcccataagccctcgaacccctcttcccacaagcccatac
gggacccatcctccgcaactaccactcatcccacagcctcctcgttcttacagcttaggg
gacctacctccatactccccagcttcatcttcttcctctccttcagtcagtagtaatcat
gagagtagtttgataaatgagcttgttgctaactcaaagtcagctttagctgacgtggaa
gtgaagttctcaggagctaatgtgctgctcaatacggtgtcgcataagatcccaggacag
cttatgaagataatcgctgctcttgaggatttggctctcgagattcttcaggttaacatt
aacaccgtcgaagaaactatgcttaactctttcaccatcaagattggaattgagtgccaa
ctaagtgcagaagaattggctcaacaaattcagcaaacattctgctaa
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