Raphanus sativus (radish): 108826975
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Entry
108826975 CDS
T06014
Name
(RefSeq) serine/threonine protein phosphatase 2A regulatory subunit B''alpha
KO
K11583
serine/threonine-protein phosphatase 2A regulatory subunit B''
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108826975
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
rsz01009
]
108826975
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rsz03019
]
108826975
03036 Chromosome and associated proteins [BR:
rsz03036
]
108826975
Protein phosphatases and associated proteins [BR:
rsz01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-2 (PP2A)
Regulatory subunits
108826975
Messenger RNA biogenesis [BR:
rsz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Protein phosphatase 2A
108826975
Chromosome and associated proteins [BR:
rsz03036
]
Eukaryotic type
Centromeric chromatin formation proteins
Other centromeric chromatin formation proteins
PP2A (protein phosphatase 2A)
108826975
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EF-hand_13
EF-hand_7
EF-hand_6
EF-hand_1
EF-hand_5
P2R3B_EF-hand
Motif
Other DBs
NCBI-GeneID:
108826975
NCBI-ProteinID:
XP_018455820
UniProt:
A0A6J0L6I9
LinkDB
All DBs
Position
9:34284092..34288043
Genome browser
AA seq
534 aa
AA seq
DB search
MDIDDVKILDPELLQLPGLSVKSNPLIAEELFSHWLSLPDTARLVKSLIDDSKSSSTPVS
ISKNCANLNIACGSALPSVFLNSGTPPLSPRGSSSGSPRFSRQKTSPFSLHSPLRSLREP
PKPQLIPQFYFQHGPPPAKELKEQCISMVDHLFSDYIDGLRIDEFKTVTKEVCKLPSFLS
SVLFRKIDVDSTGIVTRDAFIKYWVDGHMLAMDVASQIYNILRQPGCKYLRQADFKPVLD
ELLTTHPGLEFLRNTPEFQERYAETVIYRIFYYINRSGTGCITLRELKRGNLIAAMQQVD
EEDDINKVIRYFSYEHFYVIYCRFWELDGDHDFLIDKENLLKYGNHALTYRIVDRIFSQV
PRKFTSKVEGKMSYEDFAYFILAEEDKSSEPSLEYWFKCIDLDGDGVMSPNEMQFFYEEQ
LHRMECITQEPVLFEDILCQIFDMIKPEKENCITLNDLKASKLSRNVFNILFNLNKFMAF
ETRDPFLIRQERENPTLTEWDRFAQREYVRLSMEEDEVSNGSADVWDEPLESPF
NT seq
1605 nt
NT seq
+upstream
nt +downstream
nt
atggatattgacgatgttaagatattggatccagagctcttgcagcttcccggtttatcg
gttaaatcaaaccctcttattgctgaggaactcttctctcactggctttccctccctgat
actgcccgtttggtcaagtctttgattgatgattccaaatcttctagtacaccggtcagt
atatccaagaactgtgccaacctcaatattgcttgcggaagtgccttgccctctgtgttt
ctcaacagcggcactcccccgctttccccacgtggctcctcctccgggtcccctcgtttc
tccaggcaaaagactagccctttttctctccactctcctctcagatcactcagggaacct
cctaagccccaactcattcctcagttttacttccaacatgggcctcctcctgcaaaagaa
ctgaaggagcaatgtatatccatggttgatcatctttttagtgactatattgacgggctt
cgtattgatgagttcaaaaccgttacgaaagaagtctgcaagttgccttcttttctgtct
tctgttctttttagaaagatagatgtggattccaccggtatcgttacaagggatgcattt
atcaagtactgggttgatggacatatgttggcaatggacgtagcctcacagatatataat
attttaagacagccaggctgcaagtacctcagacaggctgacttcaagcccgttcttgat
gagctactaacaactcatcctggcttggaattcctgaggaatacacctgaatttcaagaa
agatatgccgagacagtcatctacagaatattttactacataaacagatcaggaactggt
tgcattacccttagagagctgaagcgtgggaaccttattgctgctatgcaacaagttgat
gaagaagacgacatcaataaagttattaggtacttttcgtatgaacatttctacgttatc
tactgcagattttgggaactcgatggcgaccatgatttccttattgataaggaaaatctc
ctcaaatatggtaaccatgcccttacctacaggatcgtcgacagaatattttcacaggtc
cctaggaaatttacaagcaaagtggaggggaagatgagttatgaagattttgcatacttc
atcctcgctgaggaggataagtcttctgagcctagtcttgagtattggttcaagtgcata
gacctggatggagatggggtgatgagtcctaatgaaatgcagtttttctatgaagagcag
ctgcatcgcatggaatgcataacccaggaacctgtactcttcgaggatatcctgtgccaa
atattcgacatgattaaaccagagaaggagaactgtatcacactcaatgatctgaaagca
tcaaaactttcgaggaatgtattcaatatactctttaacctgaacaaattcatggcgttt
gaaacccgtgacccctttctcattcgccaggagcgggaaaatccaacattgacagaatgg
gacaggtttgcgcagagagagtatgtgaggttatcaatggaagaagatgaagtctcgaat
gggagtgcagatgtttgggatgaaccactcgaatctccattttag
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