Raphanus sativus (radish): 108827097
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Entry
108827097 CDS
T06014
Name
(RefSeq) protein transport protein SEC16A homolog
KO
K20353
COPII coat assembly protein SEC16
Organism
rsz
Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
rsz04131
]
108827097
Membrane trafficking [BR:
rsz04131
]
Endoplasmic reticulum (ER) - Golgi transport
Forward pathways
Coat protein complex II (COP-II)
108827097
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Sec16
Sec16
Motif
Other DBs
NCBI-GeneID:
108827097
NCBI-ProteinID:
XP_018455946
UniProt:
A0A6J0L8W3
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All DBs
Position
9:complement(33238258..33244547)
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AA seq
1365 aa
AA seq
DB search
MASSNPQFLLDDQTDDDEDFFDKLVDDSYSPTQAQAQAQAQAAASSAANELKFDNGDGSD
SDDAAKAFADLSLGDGDAQLNESANPGSDVAIEGPISSLGKEETSPVPMEEADADKLGDD
VVVRSEDKPLLSETVKERDGSGSPVVKEVDWGSFYTDSSANGGGGFGSYSDFFTELEGSS
STGGKAEVDVVNAGNLVSNDTQNASFGFGSSAGLGQHQGEVSKDSTSDQYVDNSQAWENS
YPGWKYDANTGQWYQVDSHDVSSMSAQESYNNSTSNWESSVASTDNSNVAYLSQSTTSAV
SGTAESVSTWNQVSQVGNGYPEHMVFDAQYPGWYFDTIAQEWRSLDSYNQASQTTPTAQA
QNGHAIGAGFHSSTESSMYNINDKSQAFKPQEFGIQSQQASWDNSYYANNQQQQATNTWP
SENGGSNEASVTSLSFSQFGGNQQVNSLYSTEAVTEQFKPNANGAQGFIPQHMNVASVTQ
HGPQSFSNDFYNRQKSVDDTQHSYQSNQLFSPSVGRSPDGRPPHALVTFGFGGKLIVMKD
SQAAGGCSISVLNLAEVTSGSASFSSLGKDSSSYFRSLHQQCLPGPLVGGSVGSKDLNKW
FDESILYCESSDMDFSRGKLLKMLLSLLRISCQYYGKLRSPFGTDTTQKETDSAEAAVAK
LFAFAKKNGVQNGGYASLSQCLQHLPPESQMQVTASEVQNLLASGRKMEALQCAQEGHLW
GPALVIAAQLGDQFYTDTVKQMALRQLVPGSPLRTLCLLVAGQPAEVFSNGSTSDISFPG
SVSAPQHQTQFGSSSMLDNWEENLGIITANRTTDDELVITHLGDCMWKERSEIIAAHICY
LIADKNFDPYSDTARLCLVGADHWKYPRTYASPEAIQRTELYEYSKTLGNSQYILLPFQP
YKIIYAHMLAEVGKLSAAQKYCQAISKCLKTGRSTEVEPWKQFVSSLEERIRFHQQGGYT
VAPAKLVGKLLNFFDSTAHRVVGGMPPQAPHSTAGNLQPNEYYHQQQEATKLPYSQSATT
MQSLMSHASMEPIRELGGNSRTMAAHSRSVSEPDFGRTPIQDQPDSSKDKATDGVPQVKS
TVNVPSSRFSFGFGILKNTVRRVLPSRPSKEAKLGDENQFYYDEKLKRWVEKGVEPPAEE
AALPPPPTLGPYRSNSLGYENKSDMKNEMSPPSGSLTGIPPISQGSNQFSARGRPRSRYV
DTYNPGSGNSQTTFQSAHLKSAKPPIPAKANFFIPAAPASSSTLNDQLTEMAPAETRQEY
SAAEEEVAASAGAPTPPSHSSFQSPTPSPMTMQRFPSLDNIRRSGSGTSPNGDFPPSGSR
RTASWSGSLNSSYTSPTGPSNLRPSPLNNGSSSSSLGEELQEVEL
NT seq
4098 nt
NT seq
+upstream
nt +downstream
nt
atggcttcatcaaaccctcagtttctactggatgatcaaaccgacgacgacgaggatttc
ttcgacaagcttgtcgacgactcctattctcccacccaagctcaagctcaagctcaagct
caagctgctgcatcttctgctgctaacgagctaaaattcgacaacggcgacgggagtgac
tccgatgatgccgccaaagcttttgcggatctctctctgggtgatggggatgcgcaattg
aatgaatcagcaaacccagggagcgatgttgcaatcgagggtccaattagttcgttggga
aaggaagagacttcacccgttcctatggaagaagctgatgcagataagttaggggatgat
gttgtggtgagatcggaggataagccgttattatctgaaacagtaaaagaaagggatgga
tctgggagtcctgtggttaaggaggttgattggggctctttttatactgattcatctgcg
aacggtggcggcgggtttggttcttactctgacttcttcaccgagttggaaggatcttca
tctacagggggaaaggctgaggtagatgtggtcaatgcaggaaacttggtatcaaatgat
acgcagaacgcaagttttggttttggtagttcggcaggtttggggcaacatcagggtgaa
gtgagtaaagattctacaagtgatcagtacgttgataacagccaagcttgggaaaatagc
tatcctggttggaaatatgatgcaaatactggccagtggtatcaagttgatagccatgat
gtttcaagtatgagtgcacaggaaagctataacaactcaactagtaactgggaaagcagc
gttgcctctactgataactccaatgtcgcttatttgagtcagagcacaacttctgcagtg
tctggcactgctgagagtgtgtctacttggaaccaggtttcacaggtgggaaatggatat
ccagaacacatggtctttgacgcacagtatccggggtggtactttgacacaattgctcaa
gaatggcgctctctggacagctacaaccaggcttctcaaacaactccaactgctcaagct
cagaacggccatgctattggagctgggtttcacagcagtaccgagagtagcatgtataat
atcaatgataaaagccaggcattcaaaccgcaagaatttggtatacagagccaacaagca
agttgggacaattcttactatgccaacaatcagcagcagcaggctacaaacacatggcct
tcagaaaatggaggtagtaatgaggcgtctgtaacttctctctcattttcacaattcgga
ggaaaccagcaagtaaatagtttgtacagtacagaagctgtgactgaacagtttaagcca
aatgcgaatggagctcaaggcttcatccctcagcatatgaatgtggctagtgtcacgcag
catggaccacagagtttctcaaacgatttctataatagacagaaatccgtagatgatact
caacactcatatcagagcaatcagcttttctccccaagtgtaggaagatcacctgatggg
cgtccaccacatgcacttgtgacttttggctttggtgggaagctcattgttatgaaggat
agtcaggcggctgggggatgctctatatctgtcctaaacttggcggaagttacttctggg
agtgcttctttttcaagtcttgggaaagactcttcgagttattttcgttctctgcatcaa
caatgtcttccaggtcccttggttggaggaagtgttggaagcaaagacttaaataagtgg
tttgatgagagtattttatattgtgaatcgtctgacatggacttttcgagagggaagctt
ttaaaaatgcttctttctttgctcagaatatcttgtcagtattatgggaaactccggtct
ccttttgggactgatacaacgcaaaaggaaacggattctgctgaagcagcagtcgcaaaa
ctttttgcatttgccaagaaaaatggcgttcaaaatggtggctatgcttctttaagccaa
tgcttgcagcatttacctcctgaatcacaaatgcaagtgactgcttcagaggtgcagaat
cttctggcttctggtaggaaaatggaggctctgcaatgtgcacaagaaggccatttatgg
ggaccagcgcttgttatcgcggcacagcttggggatcagttctatactgatactgtgaaa
caaatggcccttcgccaacttgttcctgggtcacctttgcgaacattgtgcttgctggtt
gcggggcaacccgctgaagtgttctccaatggcagtacaagcgatatcagttttcctggt
tccgtaagtgcgcctcaacatcaaacccagtttggaagtagtagcatgctggataattgg
gaagagaatttgggtataataactgctaacagaaccacagatgatgagcttgtgattact
catcttggagattgcatgtggaaagaaaggagcgagataattgcggcgcatatttgctat
ttaatcgcggataagaactttgatccatactcagatactgccaggctctgtcttgtcgga
gcagatcattggaaatatcctagaacctatgcaagtccggaggctatacagagaacagag
ttatacgaatactctaagacgctgggaaactctcagtatatcttgttaccgtttcaacca
tataaaatcatatatgcccatatgctggctgaagttggtaaactttcggccgcacagaag
tactgtcaagcaatatcgaagtgtctcaagactggccgatcaactgaagtggaaccatgg
aaacagtttgtttcatcactggaagagagaatccgtttccaccaacagggcgggtatact
gtggccccagcaaaacttgtcggaaaactgctcaacttttttgatagtacagcacatcgt
gttgttgggggcatgccaccacaagcaccacattcaacagcaggaaacctacagccaaat
gagtactatcatcaacagcaggaggcgactaagttaccatatagtcagtctgctactaca
atgcaatcattgatgtcacatgcctcaatggaaccaatacgtgagttgggtgggaactca
aggacgatggcagcacattctagaagtgtctcagagccagatttcggtaggacgccaata
caggatcagcctgactcctcaaaagacaaagctactgatggggtaccacaagtgaaatca
accgtgaatgtgccaagttcgcggtttagctttggttttggcatactgaagaacactgta
agaagagtcttaccatctcggccgtctaaagaggcaaaactgggtgatgagaatcaattt
tactatgacgaaaaattaaagagatgggtggagaaaggtgtagaacccccagctgaggaa
gctgcattgcctcctcctccaacattaggcccatacagaagcaactcgctgggttatgaa
aacaaatctgacatgaagaacgagatgtctccacctagtggaagcttgacaggaatccca
ccaatctcacagggctcgaatcaattctcagctcgtggacgcccaaggagcagatacgtg
gacacctataatccaggaagtggaaactctcagacaacgtttcagtcagctcatttgaaa
tctgctaaaccaccaatccctgcaaaagcaaatttcttcatcccagcagcacctgcatca
tcatcaactttaaacgaccagttaactgagatggctcctgctgagaccagacaggagtac
tcagcagcagaagaagaagtagccgcctctgcaggggctccaacaccaccaagccactct
tcattccagtccccgacaccatctccaatgacaatgcagagatttccaagtctagataac
atcagaagaagtggatcaggaacgagtccaaacggtgattttcctccgtcaggttccaga
agaacagcttcatggagcggaagtttgaacagctcgtatacatctccaacgggtccatca
aacctcagaccaagcccactcaacaacggtagcagcagcagcagccttggagaggagctt
caagaagtggaactgtaa
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