KEGG   Raphanus sativus (radish): 108827433
Entry
108827433         CDS       T06014                                 
Name
(RefSeq) uncharacterized protein LOC108827433
  KO
K12828  splicing factor 3B subunit 1
Organism
rsz  Raphanus sativus (radish)
Pathway
rsz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108827433
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:rsz03041]
    108827433
   03036 Chromosome and associated proteins [BR:rsz03036]
    108827433
Spliceosome [BR:rsz03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108827433
 Complex B
    108827433
 Complex C
   U2 SnRNP specific factors
    108827433
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    108827433
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_2 Htt_N-HEAT_1 HEAT_ECM29 XMAP215_CLASP_TOG ParcG Vac14_Fab1_bd Adaptin_N
Other DBs
NCBI-GeneID: 108827433
NCBI-ProteinID: XP_018456331
UniProt: A0A6J0L9Y8
LinkDB
Position
9:36422539..36426697
AA seq 1265 aa
MADLDPEIAKTQEERRKMEAELSLTSVTFDRDLYGGNDRDSYATSIAPNDEEDSNLDANG
SLVAQRLASYTAPKSILNDLARAHVEDDDGGFKPRQTIAEREGDYRNRRLNRVLSPDRVD
PFAMGEKTPDPSVRTYNDHMRETAVQREREETMRLIAKKKKEAEEAAKELKDSGVAASSK
RRNRWDHAEEDGGGVAKKAKASDSDWDVADSAPGIGKWDATPGRAGDATPSVGRRGRNRW
DETPTPGRVTDSDATPGGVTPGATPSGVTWDATPRGSATPTPKRQRSRWDETPATMGSAT
PGGMTPNAAYTPGVTPFGAVDMATPTPSQLNLRGAMTPEQYNLARWEKDIEERNRPLSDE
ELDAMFPTEGYKVLDPPASYVPVRTPARKAVGTPTPMTTPGYVMPEEHRGQQFDVPQELP
DGLPFMKPEDYQYFAALLNEENEEELSPDEQKERKIMKLLLKVKNGTPAQRKTALRQLTD
KARELGAGPLFNKILPLLMQPTLEDQERHLLVKVIDRILYKLDELVRPFVHKILVVIEPL
LIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNMDEYVRNTTARAFSVVASALGI
PALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLSDENQKV
RTITALSLAALAEASAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDAIY
ASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEPDYIRSDILPEFFRHFWVR
RMALEKRNYKQLVETTVEIANKVGVADIVNKIVAEGLKDESEPYRRMVMETIDKVITNLG
ASDIDSRLEELLIDGMLYAFQEQTTDDTNVMLNGFGAVVNGLGQRVKPYLPQICGTIKWR
LNNKSAKVRQQAADLISRIAVVMKQCGEEQLMGHLGVVLYEYLGEEYPEVLGSILGALKA
IVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRIC
FELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAIV
AETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMD
RDLVHRQTAASAVKHMALGVAGLGCEDALVHLLNFIWPNIFETSPHVINAVMEAIEGMRV
ALGAAVILNYCLQGLFHPARKVREVYWKIYNSLYIGAQDTLVAAYPVLEDEQNNVYSRPE
LTMFL
NT seq 3798 nt   +upstreamnt  +downstreamnt
atggcggatctagatcccgagatcgctaaaacgcaagaggagaggcgtaagatggaagca
gagctctccctcacttccgtgaccttcgatcgcgatctctacggaggcaacgaccgcgac
tcctacgcaacttccatcgcgccgaacgacgaggaggattcgaatctggacgccaacggc
tccctcgtggctcagcgtctcgcctcctacacggctcccaagtctatcctcaacgacctt
gctcgcgctcacgtggaggatgacgacggcggatttaaacctaggcagacgatcgctgag
cgtgagggggattaccgtaacaggaggcttaaccgagttctctcgccggatagagttgat
ccgtttgctatgggggagaagactccggatccgagtgttaggacgtataacgatcatatg
agggagacggctgtgcagagggagagggaggagactatgaggctgattgctaagaagaag
aaggaagcggaagaagctgctaaggagctgaaagattctggtgttgctgcttcttccaag
aggaggaacagatgggaccatgctgaagaagacggtggtggtgttgcgaagaaggctaaa
gcttctgattctgattgggatgtagctgattcagctccagggattgggaaatgggacgca
actccagggagagctggtgacgctacaccgtctgttggaagaagagggaggaacagatgg
gacgagactcctacccctgggcgtgtgactgattctgatgctacaccaggtggtgttact
cctggtgcaactccttctggtgttacttgggacgctactccgagagggtctgcgactcca
actccgaagcgtcaacgttctaggtgggatgagacgccagctactatggggagtgctact
ccgggtggaatgactcctaatgctgcttacactcctggtgttactccattcggggcagtt
gacatggctacaccaactccgagtcagcttaatctgcgtggtgctatgaccccggagcag
tacaatttggcgaggtgggagaaggatattgaagagagaaacaggcctttgagtgatgaa
gagcttgatgccatgtttcctacagaaggatacaaagtgttagacccgcctgcttcttat
gttcccgttagaacacctgctaggaaggctgttggaacgccgacacccatgacaactcct
ggatacgttatgcctgaggagcaccgtgggcagcagtttgatgtgccccaggagcttcct
gatggtctgccttttatgaaaccagaggattatcagtattttgcagctttgttgaacgaa
gagaatgaagaggagctgtctcctgacgagcagaaagagcggaagatcatgaaactgttg
ctaaaggtgaaaaacggaactcctgctcaaaggaaaacagctctaaggcagcttactgat
aaggctcgtgagcttggtgctggtcctctgtttaataagattctgccattgctcatgcaa
cctactttggaagatcaggagaggcatctgttggtcaaagtaatcgacaggattctgtac
aaacttgatgagctggtaaggccttttgtccacaaaattctggttgttattgagcctttg
ctgattgatgaagattattatgctcgagtagaagggagagagattatttcgaaccttagt
aaagcagcaggcttagccacgatgattgcagctatgcgtcccgatatagacaacatggat
gagtacgtgaggaacacaacagcaagagctttcagtgtggtggcttcagctcttggaatt
cctgcactgttgccattcctgaaagccgtttgtcagagtaagaagtcatggcaggcacgg
cacactgggattaagattgtccagcagattgccatacttatcggctgtgctgtcttacct
catttgaggtctctggtggaaattattgaacatggtctcagcgatgaaaatcagaaggtt
aggactattacggctttgtcattggctgctcttgcggaagcttctgctccttatggtatc
gagagcttcgactctgttctgaagcctctgtggaaaggtatcaggtcccaccgtggaaaa
gtcttggctgcgttcttgaaggcgattgggtttatcatcccgttgatggatgctatatat
gcgagctattatacaaaagaagtgatggttatcttgattcgtgagttccagtcacctgat
gaagagatgaagaaaattgtcctcaaggtggtgaaacagtgtgtaagcacagaaggtgtg
gaaccggattacatccgcagtgacattttgcctgagtttttcaggcatttctgggttagg
agaatggctctagagaagagaaactacaagcagcttgttgaaaccactgttgagattgca
aacaaggttggtgttgctgatattgtgaataagattgttgcagagggtcttaaagacgag
agtgagccataccgccgtatggttatggaaaccattgacaaggtcatcacaaacttggga
gcatctgatattgattcgagactggaggagctgctcatagatggcatgctttatgctttc
caagagcagacaacagatgatactaatgtgatgcttaatggatttggtgctgtggtgaat
ggtcttggtcagcgagtgaagccttaccttcctcagatctgtggtaccatcaagtggaga
ttgaacaacaagagtgcaaaggtaagacaacaagccgctgatcttatttccagaattgcc
gttgtgatgaagcagtgtggagaggaacagttgatgggacatctcggtgttgttttgtat
gagtatcttggagaagagtaccctgaagtcttgggatcaattcttggagctctaaaagca
attgtcaacgtgattggtatgacaaagatgactcctcccattaaggatctgcttccaaga
ctgactccaattttgaagaacaggcatgagaaagtgcaagagaattgtatcgaccttgtt
ggtaggattgctgatcgtggtgctgagtttgttccagcaagggaatggatgagaatctgt
ttcgagcttcttgagatgctcaaagctcacaagaaaggtatccgacgtgccactgtcaac
acttttggatacatcgccaaagccattggaccacaagacgttctcgccacgttgctgaac
aatctcaaagtccaagagcgccagaaccgtgtctgcaccacagtggcaatcgctattgtc
gctgagacatgctctccgtttactgtcttgcccgctttgatgaacgagtaccgtgttcca
gagctcaacgtccagaacggtgtcctgaaatcactctctttcctcttcgagtacattgga
gagatgggcaaggattacatatacgcggtcacaccattgctggaggatgcgctcatggac
agggacttggttcacagacaaaccgcagcttcagcagtgaaacacatggcgttaggtgta
gctggtttgggatgcgaagacgctctggttcacttgctcaacttcatctggccgaacatc
ttcgagacatctcctcacgtgatcaacgctgtgatggaagccattgaaggaatgagagtg
gcgttgggtgcagctgtgatactgaactattgtctgcagggtctgttccatccggctcgc
aaggtccgtgaagtgtactggaagatttacaattcgctctacattggtgctcaggacacg
ctcgttgctgcttacccggttcttgaagatgagcagaacaatgtttatagccgaccagag
ttgacgatgtttctgtga

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