KEGG   Raphanus sativus (radish): 108827565
Entry
108827565         CDS       T06014                                 
Name
(RefSeq) lysine-specific demethylase JMJ17 isoform X1
  KO
K11446  [histone H3]-trimethyl-L-lysine4 demethylase [EC:1.14.11.67]
Organism
rsz  Raphanus sativus (radish)
Brite
KEGG Orthology (KO) [BR:rsz00001]
 09180 Brite Hierarchies
  09181 Protein families: metabolism
   01009 Protein phosphatases and associated proteins [BR:rsz01009]
    108827565
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:rsz03036]
    108827565
Enzymes [BR:rsz01000]
 1. Oxidoreductases
  1.14  Acting on paired donors, with incorporation or reduction of molecular oxygen
   1.14.11  With 2-oxoglutarate as one donor, and incorporation of one atom of oxygen into each donor
    1.14.11.67  [histone H3]-trimethyl-L-lysine4 demethylase
     108827565
Protein phosphatases and associated proteins [BR:rsz01009]
 Protein serine/threonine phosphatases
  Phosphoprotein phosphatases (PPPs)
   Protein phosphatase-1
    PP1-interacting proteins (PIPs)
     108827565
Chromosome and associated proteins [BR:rsz03036]
 Eukaryotic type
  Histone modification proteins
   Histone demethylases
    108827565
SSDB
Motif
Pfam: JmjC PLU-1 JmjN zf-C5HC2 ARID PHD KDM5_C-hel PHD_5 BT_3657-like_N Zn_Tnp_IS91
Other DBs
NCBI-GeneID: 108827565
NCBI-ProteinID: XP_018456490
UniProt: A0A6J0L8B1
LinkDB
Position
9:complement(27031469..27039716)
AA seq 1463 aa
MGKGRAKAVEKRVLDQKLRGSVNVPSGPVYYPTEDEFKNPLDYIHKIKPEAEAYGICKIV
PPKSWKPPFGLDMESVRFPTKTQEIHRLQFRPASCNSKTFQLEYGRFVEEQLGKKVKKKK
RVVFEGGDLDLCKVFNAVKRFGGYDKVVKGKKWGEVYQFMSSGEKISKCAKHVLCQLYKE
HLYEFEKYHGMMSADPSAKGHKRNRRCSELSSSKRRKRNADVKNHKVESEEEEVDQACEQ
CKSDKHGEVMLLCDSCNKGWHIYCLSPPLKHIPPGNWYCLDCLNTDEDTFGFVPGKCLLL
EDFKRIADRAKRKWFGSGPVSRTQIEKKFWEIVEGSGGDVEVMYGNDLDTSVYGSGFPRI
GDRRPESVEANVWDEYCHSPWNLNNMPKLKGSMLQAIRHNINGVTVPWLYLGMLFSAFCW
HFEDHCFYSVNYHHWGEAKCWYGVPGSAASAFEKVMRKALPDLFDAQPDLLFQLVTMLSP
AVLQENKVPVYTVLQEPGNFVITFPKSFHAGFNFGLNCAEAVNFATADWLPYGGYGAELY
RLYRKPAVISHEELLCVVAKGNSCDGKGSIYLKKELLRIYSKEKTLREQLWKSGILRSSP
MFLPECPDSVGIEEDTTCIICQQFLHLSAIVCSCRPSVFACLEHWKHLCECEPTKLRLVY
RYTLAELHGMVQEVEKFGDCKTQETKNSQRPSSGTKRSGASNKKQEGMQVCQARPAEDWL
RRASKVLQDVFSSDVYATLLKEAEQFLWGGSEMNRVRDVAKSLIKAKIWAEAVGDCLSKV
EGKGNNDTEKVHLEFIDELLKVDPVPCFQSGYLKLKDFAEEARKLSEKIDCSLSSSPTIA
QMELLHSEVSSSPVSLSKHKILSKKISSAKMLAKRARCYLAASKPPGIELDELFKLKSEI
LELQVTLTETEGILDLLKKSELARDKCSKVLSGFISLKNVEDLVHEFDGLCSINIRELNI
LRQYHVDALSWISRFDDTMADVREGKDQRKLISDLSSLLQDGASLGIQVEGLPLVEVELK
KASCREKAQTVYAARSSLDFIEQLLSEAVVLQIEEEKLFVEIAGTLSTARFWEERASSIL
ASETQMSDLKELVQMSVNIGAVLPSLKGIENTISLAETWLQNSEPFLSAVSSTASSPCSL
LELPVLKDLVAQSKSLGVQLEEPRILETLLLSCERWQCDNHPLLQETEDLLDTAKTDDGK
HSTILPKIMDLITRVDCARTSGLSLGLNLEELPKLQTASLKLGWCYKTILLGSSSPSPEI
PEDLGKPSLQKIQQHLEAGQTLKILPEEYHLGKRLVELKDTGQEWAKRARKVVTDSGALA
LEDVFELISEGENLPVIAEEELQALRARSMLHCVCLKPYNSRFMVSCSQCGEWYHTYCVK
LHWRPEAYVCFACCPPAESSPKNDPSRSMEPKTPSLDHRRARRVVTGAAVGDLQWKSRKR
IKRVAKRCLQVHILPWFFTREPK
NT seq 4392 nt   +upstreamnt  +downstreamnt
atgggaaaaggtagagctaaggcagtagagaaaagggttttagatcagaagctgagagga
tcggtcaatgtcccgtctggacctgtttattacccgaccgaagacgaattcaaaaaccct
ctagattacatacacaagatcaagccagaggcagaggcttacgggatctgcaagattgtt
ccaccgaaaagctggaaaccgcctttcggtttggacatggagtctgtcaggtttccgaca
aagacgcaggagattcaccggttgcagttccgtcccgcttcttgcaactccaagacgttt
cagctggagtacgggaggtttgtggaggagcagttagggaagaaggtgaagaagaagaag
agggtggtgttcgaagggggtgatttggatctgtgtaaggtgtttaatgcggtgaagagg
tttgggggttatgataaggttgtcaaggggaagaaatggggtgaggtttatcagtttatg
agctctggtgagaagatctccaagtgtgctaagcatgttttgtgtcagttgtataaagag
catttgtatgagtttgagaagtatcacgggatgatgagtgcggatccttctgcaaagggt
cacaaaaggaatcgacggtgttctgagctctctagctcgaagagaaggaaaagaaatgct
gacgtgaaaaatcataaggtggaaagtgaagaagaagaggttgatcaggcatgtgagcag
tgcaaaagtgacaaacatggtgaagtgatgctcttgtgtgatagttgtaataaaggttgg
catatatactgtctctcgccgccgttgaagcatatcccgcctgggaactggtattgcctt
gattgcttaaacactgatgaagacacttttgggtttgtgcccggtaaatgcttgttactt
gaagatttcaagcgcattgctgatcgcgccaaaaggaagtggtttggttcagggccggtg
tctaggacgcagattgagaagaagttttgggaaatagtagaagggtcaggtggtgacgtt
gaagttatgtatggtaatgacttggatacttctgtttacgggagtggttttcctagaata
ggtgatagaagaccagaatcagttgaggcaaatgtttgggatgaatattgccatagccct
tggaatctcaataacatgcctaagttgaaaggatctatgcttcaggccattcggcataac
atcaatggtgttacagtgccttggctatatcttggaatgctcttctctgctttttgttgg
cattttgaggaccattgtttttactctgtgaattatcaccactggggagaagcaaaatgt
tggtatggtgttccaggcagtgctgctagtgcttttgaaaaggtcatgcgaaaagcccta
cctgatctctttgatgctcagccagatttgctctttcaactggttactatgttgagtccg
gctgttttgcaagaaaataaagtccctgtgtacacagtattacaggagcctggaaacttt
gtgatcacgtttccaaaatcctttcatgctggattcaatttcggtttgaattgtgcagag
gccgtcaattttgccactgccgattggctaccttatggtggttatggtgcggagctgtat
aggctgtaccgtaaacctgcagtcatatctcatgaagagcttctctgtgtggtagctaag
ggaaacagctgcgatggcaaaggatcaatatatttgaagaaagaactgctcagaatatat
agcaaggaaaaaactttgagagagcagctttggaaaagtggtattttgagatcctctcct
atgtttctacctgaatgccctgattctgtgggcatcgaagaggatacaacatgcatcatc
tgccagcagtttctccatctttctgctatcgtctgcagctgcaggccatctgtttttgca
tgcttggagcactggaagcacctttgtgaatgtgaacctacaaaactgcgcctggtatat
cggtatacccttgccgagttgcatggaatggtacaagaagttgaaaagtttggtgactgc
aaaactcaagaaaccaaaaattcacaacggccgagttcaggcaccaaacggtcaggtgct
tctaacaaaaagcaggaggggatgcaagtttgccaggcacgaccagctgaagattggctt
cgtcgagcatcaaaggttctccaggatgtcttttccagtgatgtatatgccactctttta
aaggaagcagaacagtttctttggggtggatcagaaatgaaccgcgtacgggatgttgca
aaaagtttgatcaaagcaaagatatgggctgaagctgttggcgactgtctttcaaaagtc
gaaggcaaaggcaacaatgatacagagaaagttcacttggagttcatcgatgagttgctg
aaagttgaccccgttccttgctttcagtctggttatcttaaattaaaggactttgctgaa
gaggctaggaagttgtctgagaaaatcgattgttctctgtcaagtagcccaacgatcgcc
cagatggagctattgcattccgaagtttccagttcaccagtctccctaagtaaacacaag
atcttgtcaaagaaaatatcttccgcgaagatgttagctaaaagggcgagatgctatctt
gccgcttcaaaacctcctggaattgagttggatgaacttttcaagctaaagtcagagata
ttggagcttcaggtgacgcttacagaaacagaagggatcctggatttgctaaagaaatca
gaactagcccgtgataaatgtagcaaagttttgagtggttttatatctctcaagaatgta
gaagatttggttcatgaattcgatggcctttgtagcattaacattcgtgagctgaatatc
ctgaggcagtaccatgttgatgctttgtcttggatttcacgctttgatgatacaatggct
gatgttcgtgaaggcaaggaccaacgaaagctaatcagtgacctgagttcccttctccag
gatggagcatccttaggcattcaagttgaagggctccctcttgttgaggttgaattgaag
aaggcatcttgtcgtgaaaaagcacaaacggtttatgctgcaagatcgtctctggatttc
attgagcagctgctctcggaagctgttgtactacaaatcgaagaggagaagctgtttgtt
gagatcgccggaactttgtctacagcgaggttttgggaggaaagagcaagcagtattctt
gccagtgaaactcagatgtccgaccttaaagaactcgtacagatgtctgtcaacattggt
gccgttttaccctctctgaaaggcatagagaacaccatttcgttggctgaaacttggctt
cagaattctgagccctttttatctgccgtttcctctactgcctcatctccgtgttctctg
cttgaacttcctgtgttaaaggacctggttgctcagtctaaatcgcttggtgttcaactt
gaagagccaaggattcttgaaacattactgcttagttgcgagaggtggcagtgtgataat
cacccgctcttgcaagaaactgaagatttgttggacactgcgaaaacagatgatggcaag
catagcacgattcttccgaagattatggacttgataaccagagtggactgcgccagaaca
tctggtctgtcccttggtcttaatttggaagaacttcccaaacttcaaacggcaagttta
aaactaggatggtgttataagaccatcttgttaggctctagttcaccttcccctgagata
ccagaagatctaggaaagccctcgttacagaaaattcagcagcacttagaagcgggacaa
acactgaaaatattacctgaagagtatcacttaggcaagagacttgtggagctaaaagac
actggacaagagtgggcaaaacgagctagaaaagtggtgacagactcgggtgctcttgcc
ttggaagatgtattcgagcttatctctgagggtgaaaatttgcccgtcattgcagaggaa
gaacttcaggcattacgagctcgaagtatgttgcactgcgtttgcctgaagccatacaac
tcaagattcatggtttcttgtagtcaatgtggcgaatggtatcacacctattgtgttaaa
cttcactggcggcctgaggcttatgtctgcttcgcttgctgtcctccggcagaatcctct
ccaaaaaacgatccctccagatcaatggagccaaagacaccgtcacttgaccatagacgg
gcaaggagggtagtgaccggtgcagcagttggtgatttgcagtggaaaagccgtaaacgc
atcaaaagggtagctaaacggtgtcttcaggttcatatccttccctggtttttcactcga
gaaccaaaataa

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