Raphanus sativus (radish): 108827721
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Entry
108827721 CDS
T06014
Name
(RefSeq) transcription initiation factor TFIID subunit 15b
KO
K13098
RNA-binding protein FUS
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz03015
mRNA surveillance pathway
rsz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108827721
09122 Translation
03015 mRNA surveillance pathway
108827721
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
rsz03041
]
108827721
Spliceosome [BR:
rsz03041
]
Complex A
Other components
Complex A specific factors
108827721
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Zn_ribbon_RanBP
Motif
Other DBs
NCBI-GeneID:
108827721
NCBI-ProteinID:
XP_018456697
UniProt:
A0A6J0L9D2
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All DBs
Position
9:6365460..6368641
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AA seq
432 aa
AA seq
DB search
MSGTYNQGGGGGGGGAPIPSYGGDGYGGGGGGGYGGRSSSGGGGYGGRGGYGGGGGRGNQ
GGGGYQGGDRGGRGGGGGGGRGGGGRDGRGRDGDWRCPNPSCGNVNFARRVECNKCGAPA
PSGTGDRGGGRGASDRAGGGRDSSRDSGRSYESSRYDGGSRSGGGGSYGSDSQPRGNGSY
GQGPPPPLAAIPSYDGSGSYPPPMGYGMEAVPPPSSYAGGPPSYGGPTGGYGGDAPSTGG
RGGRGGGYDGGRGGGYDGGSAPRRQEPNYGDAPAEKVKQCDENCDETCDNARIYISNLPP
DVTTDELKDLFGGIGQVGRIKQKRGYKDQWPYNIKIYTDEKGKNKGDACLAYEDPSAAHS
AGGFFNNYEMRGNKITVAMAEKSAPKAPAFDQRGGGGRGGGGYGGGGGDRRRDNYGSGPD
RNHHGGNRSRPY
NT seq
1299 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaacgtacaatcaaggcggcggcggcggcggtggtggtgcgcctattccgtcg
tacggtggggatggatacggaggaggaggaggtggaggttatggaggtcgcagttcctct
ggcggaggtggatacggcggacgcggtggttacggtggcggcggcggtagaggaaatcaa
ggcggtggtggatatcaaggaggtgatcgcggtggaagaggaggtggaggaggcggcggg
agaggcggtggtgggagagatggtcgtggtagagatggtgattggcgttgccctaaccct
agttgtgggaacgtgaactttgcaaggagagttgaatgtaacaagtgtggtgcacctgct
ccttctggcactggtgaccgaggaggtggccgaggtgccagtgatcgtgctggtggtggt
cgtgatagtagtcgtgatagtggtaggagctatgagagtagtagatatgatggtggcagt
aggagtggtggtggtggctcttatggtagtgatagtcaacctaggggtaatggttcttat
ggtcagggtcctccgcctcctttggcggctattccatcctatgatggttctggcagttac
cctccacccatggggtatggaatggaagcagttcctccgccttcaagctatgcagggggt
ccaccttcgtatggtggtcccacagggggttatggcggtgatgcaccgagcactggtggt
cggggtggtagaggtggtggatatgatggtggtagaggtggtggctacgatggtggtagt
gctcctcgacgccaggaacctaactatggagatgcacctgctgaaaaagtcaagcagtgc
gacgagaattgtgatgaaacttgtgataatgccagaatatacatctctaatttacctccg
gatgtgacgaccgatgaactcaaggatctctttggtggcattggccaagttggaagaatc
aagcagaagcggggttacaaagatcagtggccctataacatcaagatttacactgatgag
aagggaaagaacaaaggtgacgcctgcctggcttatgaagatcccagcgcagcacactcg
gcaggcggctttttcaacaattatgaaatgagggggaacaagattactgtagcgatggca
gagaagtctgcgcctaaagctcctgcttttgaccagagaggtggcggtggtagaggaggg
ggtggctatggtggtggtgggggagacagaagaagagataactatggttcaggaccagac
agaaaccaccatgggggaaaccggtcgcgtccgtattga
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