Raphanus sativus (radish): 108827799
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Entry
108827799 CDS
T06014
Name
(RefSeq) probable pectate lyase 22
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
rsz
Raphanus sativus (radish)
Pathway
rsz00040
Pentose and glucuronate interconversions
rsz01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
rsz00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108827799
Enzymes [BR:
rsz01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108827799
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108827799
NCBI-ProteinID:
XP_018456790
UniProt:
A0A6J0L9B5
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Position
9:complement(36281800..36284013)
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AA seq
409 aa
AA seq
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MLNSSHAFFTLVFLYLFFTALALSLPVSDPELVVEEVHRKINESISRRNLGYFSCETGNP
IDDCWRCDKDWEKNRKRLADCGIGFGKNAIGGRDGEIYVVTDPGNDDPVNPKPGTLRYAV
IQDQPLWIIFSRDMTIQLKEELIMNSFKTLDGRGASVHISGGPCITIQYVTNIIIHGLNI
HDCKQGGNTYVRDSPEHYGWRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIRGSTA
ITISNNYLTHHNKVMLLGHSDTYVQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNND
YTHWEMYAIGGSANPTINSQGNRFLAPDGPDDKEVTKHEDAPESEWSNWNWRSEGDLMLN
GAFFTLSGAGPTKSSSYSRASSLAARPSSRVGDLTIASGALSCKKGSHC
NT seq
1230 nt
NT seq
+upstream
nt +downstream
nt
atgctaaattcatcacatgcattctttacacttgtctttctttaccttttcttcaccgca
ttggctttgtctttgcctgtttccgaccccgagctcgtcgttgaggaagtacacaggaaa
ataaacgagtctatatcaagaaggaacttagggtacttctcgtgtgagaccggtaaccca
attgatgattgttggcgatgcgacaaagattgggagaaaaaccgaaaacggttagctgat
tgtggaatcggttttggcaaaaacgcaattggtggtcgtgatggcgaaatctacgtagtc
actgatccaggaaacgatgatccagtaaaccctaaacccggaacgctaagatatgcagta
atccaggaccaacctctttggatcatatttagccgtgacatgacgatccaactaaaagaa
gaactcataatgaactctttcaaaaccctagacggacgaggtgcttccgtacacatctct
ggtggaccgtgcataaccatacaatatgtgaccaacattataatccatggtttaaacata
catgactgtaagcaaggtgggaacacttacgtgcgagactctccagagcactacggttgg
aggactatatcggatggtgatggtgtgtccatcttcggcgggagccacgtgtgggttgat
cattgctcgctctcgaattgtaacgatgggttgattgatgcgatacgtggatcaacggct
ataactatctctaataattacttgacgcatcataataaggttatgttattgggacatagc
gacacgtatgtgcaagacaagaacatgcaagtcactatcgcttttaaccattttggagaa
ggcctcgtccaaagaatgccaagatgccgacatggatatttccatgtggtgaacaacgac
tacacacattgggaaatgtatgcaattggaggaagtgcaaatcctaccatcaactctcaa
ggcaaccgttttcttgctcctgatggtcctgatgacaaagaggtaacaaagcatgaggat
gcacccgagagtgaatggagtaattggaactggagatcagaaggagatctaatgcttaac
ggtgcattctttacactttctggagctggaccaactaaatcgtcaagctattcaagagcc
tcaagcctagctgctagaccgtcctctcgtgttggtgatttaactatagcatcgggtgca
ctcagctgcaaaaagggttctcactgctga
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